Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00779 ATGGAAGAAGGAAGTGGTGGAAAGGAAGAAACCCTACCACCTGGATTTCGATTTCATCCTACTGACGAAGAACTCATCACTTGCTATCTCATAAATAAGATTTCAGATTCTACTTTTACAGGCAAAGCCATCACTGAAGTCGATCTCAACAAATCTGAACCATGGGAACTCCCAGGGAAGGCAAAGATGGGAGAAAAGGAATGGTACTTCTTCAATCTGAGAGATCGTAAATACCCAACGGGTGTGAGAACCAATCGAGCAACGAACACAGGGTATTGGAAGACCACAGGGAAAGACAAAGAGATCCACAACAGTGTTACATCAGAGTTGGTTGGCATGAAGAAGACTTTGGTATTCTATAAAGGCAGAGCTCCCAGAGGAGAGAAAAGTAACTGGGTCATGCATGAATACCGTATTCACTCAAAATCCACCTTCAGATCAACCAACAAGCAGGATGAATGGGTGGTTTGCCGGGTGTTCCAGAAGAGTGGTGGTGCAAAAAAGCACCCTTCTTCTAACCAAACAAGAACAGTGAATCCTTATAGCTTGGGAATAGGTCCTAACATTGTACCACCATCAATGATGCAATTGGGAGATCCTGCTACTCATTTCCTTTATGGAAGGAATTACATGAACAATTTAGAGTTTGCTGAAATTGCTAGGATTTTGAGAGGGGGTGGATCAACCAGTAGTAGTGTCAATTTACCAATGCAATCCCAATTGAACTACCCTGTATCAGCAGCATCAACAGGGGGAGGATTCACCATTTCAGGGCTTAATTTGAATCTTGGATCAGGAGCAACAGCAGCCACAACACAACCAATTTCAAGGCCAATTTTGGAACCTTCTCAGACAATGGGTCAAGTACATGATATTGTCAGTTCCAACATGATGATGATATTGACACCCGGTTCTGTTGGAGCAGAGAATGTAGGTTATGGTACATCAGAAATTAACAACACAAATCCTCATCATGGTAATAGGTTTATGGGGATGGAACATTGCATGGATCTAGACAATTACTGGCCTTCCTACTAA 1038 0.4249 MEEGSGGKEETLPPGFRFHPTDEELITCYLINKISDSTFTGKAITEVDLNKSEPWELPGKAKMGEKEWYFFNLRDRKYPTGVRTNRATNTGYWKTTGKDKEIHNSVTSELVGMKKTLVFYKGRAPRGEKSNWVMHEYRIHSKSTFRSTNKQDEWVVCRVFQKSGGAKKHPSSNQTRTVNPYSLGIGPNIVPPSMMQLGDPATHFLYGRNYMNNLEFAEIARILRGGGSTSSSVNLPMQSQLNYPVSAASTGGGFTISGLNLNLGSGATAATTQPISRPILEPSQTMGQVHDIVSSNMMMILTPGSVGAENVGYGTSEINNTNPHHGNRFMGMEHCMDLDNYWPSY. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00779 345 ProSiteProfiles NAC domain profile. 12 162 IPR003441 GO:0003677|GO:0006355
Seca4g00779 345 Gene3D NAC domain 21 165 IPR036093 GO:0003677|GO:0006355
Seca4g00779 345 FunFam NAC domain-containing protein 100-like 21 166 - -
Seca4g00779 345 SUPERFAMILY NAC domain 10 162 IPR036093 GO:0003677|GO:0006355
Seca4g00779 345 Pfam No apical meristem (NAM) protein 13 139 IPR003441 GO:0003677|GO:0006355
Seca4g00779 345 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 9 227 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00779 Seca-Chr4 13054040 13057134 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00779 1 345 NAC Transcription Factor Family AT2G24430 50.000 8.12e-108 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Seca4g00779 NAM 1.9e-39 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00779 - - gmx:100804931 542.347