Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00774 ATGGTATCTGTCCAAACAAATCATATGGAAAGGGAAAGAACGCGGAAACGGCCTCGTCTCGCGTGGGATGTAGCCCCTCCCTCAGAGCATGAGGCGCAAAGGGCTCTGGTAATGGTAGGTGACGGAGGAATCGTAAGAAAGCATGTATCTCCTCCAAGAAGGGACGACGATCGCGATGGCCATTATGTCTTTAATCTCGGCGAAAATCTCACTCCTAGATATAAAATCCTCAGCAAGATGGGTGAAGGCACCTTTGGTCGAGTTTTGGAATGTTGGGATCGCCAAACTAGAGAGTATGTGGCTATCAAGGTAATTAGAAGCATACAGAAATATCGAGATGCAGCTATGCTTGAGGTTGATGTGCTTCAATGTCTAGCGAAGAATGATCGAGGAAGCTCACGCTGTGTGCAGATGCAAAATTGGTTTGATTACAGAAATCACATATGCATTGTCTTTGAGAAGCTTGGACCAAGCTTATTTGATTTTCTAAAGAGAAATAAATACTGCCCATTCCCTGTGGATCTTGTTCGTGAATTTGGACGACAGCTTTTGGAATCTGTAGCATGTCTGTGGATTATTCTTGACCTTCTGTTTATTTCTCATGTCTTATTCATATATCTCTTGCTTACAGACCAACCACATCATTTTCCTTGGCTTACTTTGTTAGTCCAGGGTTGCTTTGTATCTTTGTTGTGTCTGCTTACTTTAACTTGTTTCTTGTGCTTTATCATATTCAGATATGCATGA 747 0.423 MVSVQTNHMERERTRKRPRLAWDVAPPSEHEAQRALVMVGDGGIVRKHVSPPRRDDDRDGHYVFNLGENLTPRYKILSKMGEGTFGRVLECWDRQTREYVAIKVIRSIQKYRDAAMLEVDVLQCLAKNDRGSSRCVQMQNWFDYRNHICIVFEKLGPSLFDFLKRNKYCPFPVDLVREFGRQLLESVACLWIILDLLFISHVLFIYLLLTDQPHHFPWLTLLVQGCFVSLLCLLTLTCFLCFIIFRYA. 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00774 248 SUPERFAMILY Protein kinase-like (PK-like) 61 190 IPR011009 -
Seca4g00774 248 SMART serkin_6 74 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00774 248 Pfam Protein kinase domain 74 190 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00774 248 FunFam Serine/threonine-protein kinase AFC2 61 154 - -
Seca4g00774 248 Gene3D Phosphorylase Kinase; domain 1 61 154 - -
Seca4g00774 248 ProSiteProfiles Protein kinase domain profile. 74 248 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00774 248 PANTHER SERINE/THREONINE-PROTEIN KINASE DOA-RELATED 21 189 - -
Seca4g00774 248 Gene3D Transferase(Phosphotransferase) domain 1 128 190 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00774 Seca-Chr4 13022099 13024062 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00774 58 205 EF-hand Containing Proteins AT5G22840 31.169 2.06e-16 76.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CMGC_CLK Seca4g00774 Pkinase 5.1e-12 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00774 K08287 - gmx:100782453 349.747
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00774 4 13022099 13024062 Seca4g00774 4 13022099 13024062 ECH