Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00761 ATGTTTGCACCATTTTCGCCGGCGATTTCTCCGGCAACCAAGCCACCACAGCCAGCATTTGACACTGCTGCTCCGCCATTGCCGGGACCAGTATCACCTCCGTTCGACTCTCCGCCGCCACCACTACCACCATTGTCTCCGGCGCCTTCAGCACCTCCGGTTACCTCGCCGGTGACTACAGCTCCGCCGACGCCTTCTTCAACGGTACCACTGCCTACAAACTCTGCGCCTCCAGTTACCTCGCCAGCGACTTCATCTCCGCCGACGGTGTCTTCAACGCCGCCACTGCCAGCAAACTCTGCACCTCCGGTTACTTCGACGGTGCCGCTGCCTACAAATTCTGCACCTCCAGTTGCATCACCGGAAATTCCTGCTCCGCCGGTGTGGCCCTCACCGTCACCAGAAAGTTCGCACGTTCCAACTTCTTCTTCGCCTCCGAATACATCGAATGAGATTCCAGATTCGTCAACACTGTCTCCTCCAGTTATGTCACTTCCTCCGGTGATGCCGTTGCCATCTCCGTTGCCTCCGGCATCTCAGCCACCACCGTTTCCGCCATCAACAGTTGCGGCAACGCCTCCAACGGTCACTTTTTCACCACCTTCAACATCTACATTGCCAGAGGAAATGCCTCCGCCACCGCCTTTGCCTATTCCATTCACGGAACCTCCTTTGTCATCACGGCCAACACCGGTGTCTTCACCGGAAGTGAATTTGCGGCCAACCTCATCAAGTAGAAGTTTGCCGGTAGCTGTGGAAGTTCAGAGGCCTTCAGGCTTCAATGTGTCAAGTGGACTCATCGTTGGAGTTGTTATTGGAGCTATCTTTTTTGTTTTTGTTCTTGCCATTGTATCAGTTCTATGCAGAAATAGGAAGAAGAAGAAGAAGAAGAAGCAGAAGAATTGGTCCTTACATCACCAAAAGGAGTCATCATCACCCTGTGTTGGATCAAAAGGGTCTCATGTAATTCGAGTGCCATCAAATCCAACTCTGCCACCACATCTCACTGAGGACGGTGGTCTCGGTAGAGCTTCTGATTCTGTTAATTCTGGGTCTGTGAGAACAATTCCAAATCAAGCTCCAAGCATTGCCTTTGGTCCTGTGAATGGTATTTTCGCATATGAGGAACTAGAGGTAGCCACTAAGTATTTCGCTGAGTCTAACCTTCTTGGAGAAGGTGGTTTTGGGTATGTATACAAAGGAGTTCTCCCCTGTGGAAAGGAAATTGCAGTTAAACAGTTAAAAGCAGGAAGCCAGCAAGGAGAGCGAGAATTTCAAGCTGAGGTTGAGACCATTAGCCGGGTACATCATAAACATCTTGTTGAATTGGTGGGATACTGCATTAACAGGGCTGAAAGATTGCTTGTTTACGAATTTGTTCCAAATAACACATTGGAATTCCACTTACATGGGGAGGGGAAAGCAGTCATGGAATGGGCAACCAGAGTTAAAATTGCATTGGGATCTGCAAAAGGGCTGGCATATCTACATGAAGATTGTAATCCGGCAATCATTCACCGAGATATAAAGGCATCTAATATTCTTCTTGATTTGAAGTTTGAAGCAAAGGTTTCTGACTTTGGGCTGGCAAAAATCTTCCCTAACACCGATAGTTGCATTACTCACCTCACCACTCGAGTGGTGGGAACCTTTGGGTATCTGGCTCCAGAGTATGCATCAAGTGGTAAATTAACAGATAAATCAGATGTATATTCCTATGGCGTCATGCTTTTAGAACTTATAACCGGACGTCCACCAATCACTGCAGTAGGATCAAGGAATGAGAGCCTGGTTGACTGGGCTAGGCCCTTGCTTGCTCAGGCGCTACAAAATGGTAACTTCAACAATCTTGTTGATCCAAGGTTGCAGAAAAATTACGAAGCTGATGAGATGGCTAGAATGATTACGTGTGCAGCTGCTTGTGTGCGCCATTCAGCCAGGCTTCGACCACGCATGAGCCAAATAGTTGGTGCCTTAGAAGGACTGGTTTCTCTAACCGATATCGTTGGGGACATTACACCGGGGCATACCACATTATACAGTTGGTCAGATAATTCAGATTATGATGCCAGCCAATATCAGCAGCATATAAGAAATTTCAATTTGGCATCATCATGTCAGAAGTACAGCTCCAGCGGGCATAGTGAAAGTACCAGTGCTTATGGTCTTTACCCATCAGCCTCGAGTAGTGAGGTTCAGGAGGCAATCCGAGACAGAGATCAAAGATAG 2229 0.4814 MFAPFSPAISPATKPPQPAFDTAAPPLPGPVSPPFDSPPPPLPPLSPAPSAPPVTSPVTTAPPTPSSTVPLPTNSAPPVTSPATSSPPTVSSTPPLPANSAPPVTSTVPLPTNSAPPVASPEIPAPPVWPSPSPESSHVPTSSSPPNTSNEIPDSSTLSPPVMSLPPVMPLPSPLPPASQPPPFPPSTVAATPPTVTFSPPSTSTLPEEMPPPPPLPIPFTEPPLSSRPTPVSSPEVNLRPTSSSRSLPVAVEVQRPSGFNVSSGLIVGVVIGAIFFVFVLAIVSVLCRNRKKKKKKKQKNWSLHHQKESSSPCVGSKGSHVIRVPSNPTLPPHLTEDGGLGRASDSVNSGSVRTIPNQAPSIAFGPVNGIFAYEELEVATKYFAESNLLGEGGFGYVYKGVLPCGKEIAVKQLKAGSQQGEREFQAEVETISRVHHKHLVELVGYCINRAERLLVYEFVPNNTLEFHLHGEGKAVMEWATRVKIALGSAKGLAYLHEDCNPAIIHRDIKASNILLDLKFEAKVSDFGLAKIFPNTDSCITHLTTRVVGTFGYLAPEYASSGKLTDKSDVYSYGVMLLELITGRPPITAVGSRNESLVDWARPLLAQALQNGNFNNLVDPRLQKNYEADEMARMITCAAACVRHSARLRPRMSQIVGALEGLVSLTDIVGDITPGHTTLYSWSDNSDYDASQYQQHIRNFNLASSCQKYSSSGHSESTSAYGLYPSASSSEVQEAIRDRDQR. 743
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00761 742 ProSitePatterns Serine/Threonine protein kinases active-site signature. 504 516 IPR008271 GO:0004672|GO:0006468
Seca4g00761 742 MobiDBLite consensus disorder prediction 135 162 - -
Seca4g00761 742 Gene3D Transferase(Phosphotransferase) domain 1 460 669 - -
Seca4g00761 742 SMART serkin_6 384 635 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00761 742 Gene3D Phosphorylase Kinase; domain 1 354 459 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 205 230 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 1 244 - -
Seca4g00761 742 CDD STKc_IRAK 390 662 - -
Seca4g00761 742 FunFam proline-rich receptor-like protein kinase PERK8 460 674 - -
Seca4g00761 742 PANTHER PROLINE-RICH RECEPTOR-LIKE PROTEIN KINASE PERK4 275 703 IPR047117 -
Seca4g00761 742 ProSitePatterns Protein kinases ATP-binding region signature. 390 412 IPR017441 GO:0005524
Seca4g00761 742 MobiDBLite consensus disorder prediction 114 134 - -
Seca4g00761 742 SUPERFAMILY Protein kinase-like (PK-like) 362 659 IPR011009 -
Seca4g00761 742 ProSiteProfiles Protein kinase domain profile. 384 663 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00761 742 Pfam Protein kinase domain 386 615 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00761 742 MobiDBLite consensus disorder prediction 163 190 - -
Seca4g00761 742 FunFam Proline-rich receptor-like protein kinase PERK8 356 459 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 9 104 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 712 732 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 712 742 - -
Seca4g00761 742 MobiDBLite consensus disorder prediction 297 352 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00761 Seca-Chr4 12778882 12783836 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00761 222 722 Trihelix Transcription Factor Family AT5G38560 49.409 4.50e-148 446
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-1 Seca4g00761 Pkinase 1.8e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00761 - - gmx:100810262 763.451