Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00751 ATGAAAGTGCATTTGCAGATCGATCTTCGATATCACTCTCCGCTTGGATCTGCAAATGCGCACCGTTTCGATCTCTTCATCCGTTATCCCTCATCCTTGCATTCTGAAGCTCAGTCCGGTGAGAGGACTACTGGCCCTACAAGGCGCTCTACCAAAGGACAATGGACACCTGAGGAGGATGAGATTTTGCGGAAGGCTGTTCAGCGTTTCAAAGGAAAGAATTGGAAAAAAATAGCGGAGTGTTTCAAGGACAGAACTGATGTGCAATGCCTGCATAGGTGGCAGAAGGTCTTAAACCCGGAACTTGTCAAAGGTCCATGGTCTAAAGAGGAAGATGAAATAATTATTGATTTGGTGAACAAATATGGGCCAAAAAAGTGGTCTACTATAGCACAACATTTACCTGGACGTATTGGTAAGCAATGTCGAGAAAGGTGGCACAATCATCTTAATCCTTCTATAAACAAGGAAGCATGGACGCAGGAAGAGGAGGTGGCTCTAATCCGTGCTCATCAGATTTATGGGAACAGATGGGCAGAATTGACGAAATTCTTGCCTGGAAGGACAGACAATGCTATAAAAAATCACTGGAACAGTTCTGTCAAAAAGAAATTGGATTCTTACTTGGCATCGGGCTTGCTTGCTCAGTTACAAGCTGTACCACTTGTTGGAAATCCGAATCAACCTATTGCTTCAACCTCTTCAAGGTTGCAGCGCAGTGGAGATGATAATGGTCCTAGGGGGACTGAAGGAGAGGAAGTTTCACAGTGTAGCCAGGAGTCAGCTAATGCTGGTCACTTTTCGTCTGCCAGAGAGATGAGCAATGCTGTTTTACAAACCAGGGAGGAATACAGACCAAATGAAGAATCTAATACAGTCAAGGAATATAGTCCTAGTCAAGTATCCTGTTCTGAGCCATATTACGTGTGTCTGGATGAGGTTTACCCTTCTCGATTGATTGAGCAGAACTACACACATGAACCTAGAAATTCTACAAACGGGGATTGCCAAGTTAATTTACATGACTTACCCGATATTTCGTCACTGGAATTTGAGCAGGAATCATCACAATTGCAAAATGATTGTATAGTTCCCGGGGAAAGTCATGACATGGTGAATGTTCCATTTCAGTCTTCAGTGGGGTTGAGTGTTGCTACGTCCATGGGACCTACATCTATGGACTCTGTTAAACCAGAGCACATGCTGATATCTGATGATGAATGTTGCAGAATCCTATTTTCAGAGGCAATGAGTGATGAATGCTTTTCCTCTGGAGATTATAGGGTTGACATGTCTGGATGCACTTCATTTCTTTGTCAGTCATCTTTACCATCTGATCAATCAGTACCTTCTTCTACTGGTGATAGGTTGCTGTATACTGCCGAAGCCAATCAGTTGGTTGGGTCTGAGGATCAGCAGTTGGTCTCCAGAGCACATGATAACTTACTTTATGCCAATGACTCGTCCAGTTCTCCTTGCATTGATAGGATAGATAGTGCAGCAACGCAAGAGCCATCGGATACTTCAAATGTGGTCCCTGTAAATAGTTTTGGCCATGGATCAGATACTACGCAAACTTGCAATCCAATTGATGAAAAGCCAAATGCGGATACAGAACAGGACACAGGAGCTCTATTTTATGAACCTCCCCGTTTCCCAAGCTTGGATATTCCTTTCTTAAGCTGTGACCTTATACAATCCGGGGGTGATATGCAACAAGAATTTAGTCCCTTGGGAATCCGCCAGTTTATGATGTCTTCTATGAACTGTCTAACTCCCTTCAGATTGTGGGATTCACCTTCTCGGGATGATAGTCCAGATGCTTTGTTGAAAAGTGCTGCTAAAACTTTCACAGCTACACCATCCATATTAAAGAAACGACACCGAGACCTTTTATCTCCATTATCAGATAAAAGAATCGACAAGAAACTTGAGATTGACATGACATCAACCTTGATTAAAAACTTTTCCCGTTTGGATGTCATGTTTGAAGACAATGAGACTCGGGGAGCAGATTTGCTTTCTCCAGCTTCAATGCAAAAAAGAAACTCTGGTACGTCTCTCGAAGATGATAAAGAAAATTGTGGACAAGCTTTTAAAGTGGAACAAGTAGAGGAGAAAAATAAATCTGCAATAATATTGGACGACAAAAAGTCAGAAAAAGATGCTGGTGAAAGTAATTCTCAGAACAAGAAGAATGATGTTAATGCTGCAGCTGACATTGTGCGACAACCTTTGGGAGTTTTGTTTGAACATGATATGAATGAAATGTTACTGTATTCTCCTAATCAAGTTGGTTTATCAGACAGAGTTCTAAGTTTAAGTGCCAGAAGTAATAAAAATCCATGCTCAAGGATTAACTCTCCTTCTGTTCGAGCAACGGAGCATGAAATACTTTCAGTTAATACAGGAAACGATGGTGGTTTTGAAGCATGTAGCATATTTGGGGGAACACCTTTTAGGAAAAGCATTGAATCACCTTCAGCATGGAAATCTCCTTGGTTCATCAACACTTTCGTGTCTAGCCCCAGGACTGAAATTACAATTGAGGATTTTGGGTATTTCATGAGCCCAGGTGATAGAAGTTACGATGCAATCGGATTGATGAAACAGATCAGCGAACAAACCGCTGCTCAATATGCCAATGCTCATGAGATTTTGGAAAATGAAACTCCTAAGGCGTTACCAAAAGATGCATCTGGAAACGATAGGAATGGCGATCAGGAAAATAACGAACCTCATAATCAGCATGGGAACCATTCTCAGTTGTCTTCAAATGCTCTGGTGGAGCGACGCATACTTGACTTCAGCGAATGTGGAACTCCGGGCAAGGCTGATAATAGCAAATCTTCAGCTATGAGCTTCTCTAGCCCTTCTTCATATTTGTTGAAGGGTTGTAGATAG 2904 0.4205 MKVHLQIDLRYHSPLGSANAHRFDLFIRYPSSLHSEAQSGERTTGPTRRSTKGQWTPEEDEILRKAVQRFKGKNWKKIAECFKDRTDVQCLHRWQKVLNPELVKGPWSKEEDEIIIDLVNKYGPKKWSTIAQHLPGRIGKQCRERWHNHLNPSINKEAWTQEEEVALIRAHQIYGNRWAELTKFLPGRTDNAIKNHWNSSVKKKLDSYLASGLLAQLQAVPLVGNPNQPIASTSSRLQRSGDDNGPRGTEGEEVSQCSQESANAGHFSSAREMSNAVLQTREEYRPNEESNTVKEYSPSQVSCSEPYYVCLDEVYPSRLIEQNYTHEPRNSTNGDCQVNLHDLPDISSLEFEQESSQLQNDCIVPGESHDMVNVPFQSSVGLSVATSMGPTSMDSVKPEHMLISDDECCRILFSEAMSDECFSSGDYRVDMSGCTSFLCQSSLPSDQSVPSSTGDRLLYTAEANQLVGSEDQQLVSRAHDNLLYANDSSSSPCIDRIDSAATQEPSDTSNVVPVNSFGHGSDTTQTCNPIDEKPNADTEQDTGALFYEPPRFPSLDIPFLSCDLIQSGGDMQQEFSPLGIRQFMMSSMNCLTPFRLWDSPSRDDSPDALLKSAAKTFTATPSILKKRHRDLLSPLSDKRIDKKLEIDMTSTLIKNFSRLDVMFEDNETRGADLLSPASMQKRNSGTSLEDDKENCGQAFKVEQVEEKNKSAIILDDKKSEKDAGESNSQNKKNDVNAAADIVRQPLGVLFEHDMNEMLLYSPNQVGLSDRVLSLSARSNKNPCSRINSPSVRATEHEILSVNTGNDGGFEACSIFGGTPFRKSIESPSAWKSPWFINTFVSSPRTEITIEDFGYFMSPGDRSYDAIGLMKQISEQTAAQYANAHEILENETPKALPKDASGNDRNGDQENNEPHNQHGNHSQLSSNALVERRILDFSECGTPGKADNSKSSAMSFSSPSSYLLKGCR. 968
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00751 967 MobiDBLite consensus disorder prediction 711 736 - -
Seca4g00751 967 ProSiteProfiles Myb-like domain profile. 99 150 IPR001005 -
Seca4g00751 967 MobiDBLite consensus disorder prediction 226 242 - -
Seca4g00751 967 ProSiteProfiles Myb-like domain profile. 151 201 IPR001005 -
Seca4g00751 967 SUPERFAMILY Homeodomain-like 101 197 IPR009057 -
Seca4g00751 967 ProSiteProfiles Myb-like domain profile. 47 98 IPR001005 -
Seca4g00751 967 MobiDBLite consensus disorder prediction 943 961 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 900 914 - -
Seca4g00751 967 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 155 205 IPR017930 -
Seca4g00751 967 SMART sant 155 203 IPR001005 -
Seca4g00751 967 SMART sant 103 152 IPR001005 -
Seca4g00751 967 SMART sant 51 100 IPR001005 -
Seca4g00751 967 MobiDBLite consensus disorder prediction 36 57 - -
Seca4g00751 967 Coils Coil 870 890 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 36 52 - -
Seca4g00751 967 Gene3D - 157 216 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 251 270 - -
Seca4g00751 967 FunFam Transcriptional activator Myb isoform A 51 103 - -
Seca4g00751 967 PANTHER MYB PROTEIN-RELATED 52 125 - -
Seca4g00751 967 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 47 98 IPR017930 -
Seca4g00751 967 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 99 154 IPR017930 -
Seca4g00751 967 Gene3D - 104 155 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 711 728 - -
Seca4g00751 967 FunFam Transcriptional activator Myb isoform A 104 156 - -
Seca4g00751 967 SUPERFAMILY Homeodomain-like 48 104 IPR009057 -
Seca4g00751 967 Pfam Myb-like DNA-binding domain 52 98 IPR001005 -
Seca4g00751 967 Pfam Myb-like DNA-binding domain 156 198 IPR001005 -
Seca4g00751 967 Pfam Myb-like DNA-binding domain 104 150 IPR001005 -
Seca4g00751 967 FunFam Transcription factor MYB3R-2 157 219 - -
Seca4g00751 967 Gene3D - 51 103 - -
Seca4g00751 967 CDD SANT 158 198 IPR001005 -
Seca4g00751 967 MobiDBLite consensus disorder prediction 226 270 - -
Seca4g00751 967 CDD SANT 55 98 IPR001005 -
Seca4g00751 967 MobiDBLite consensus disorder prediction 501 524 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 887 927 - -
Seca4g00751 967 MobiDBLite consensus disorder prediction 939 967 - -
Seca4g00751 967 CDD SANT 106 150 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00751 Seca-Chr4 12590359 12596497 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00751 42 967 MYB Transcription Factor Family AT4G32730 45.229 0.0 728
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Seca4g00751 Myb_DNA-binding 2.8e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00751 - K09420 gmx:100811335 1472.6