LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00738	ATGGAGCAGAGCGAAACGACGCTGGATTTAGCTCCGCGGAAATTGGCGAGGCAATTGGATTTCACTGCCGTCTCTGGAGGTCCGGCACACCTGAAACTGCCTCTGCCGACACCGCAGTCACTGTCTCAACCGATTCTGCGGCCACCATTGCAGCCGCAGCCGCCGCGCTCTCCATCGCAATTACAATTGGATTTGCAGTCACCAGGGCAACGGCTGCGGTTATATTCACCGCCACAGGGGCAACAGCAGAGAACAACACATTCACAGGTAATGCCGCAATTGCAAGCACCGCGGCCACAGCTAGTTTCGCCGGTTCATCGATTTCCGCACCCCGTGCAGAAACTTCCGGTGAAGATGAAGCAAGAGTCTCCTAGATCACAACCTCGAAATAATGTGGAATTAAAGGACGGCACTCCAAAGAAACAAAAACAATGCAACTGCAAAAATTCTCGATGCCTCAAATTGTACTGTGAGTGCTTTGCAGCTGGAATCTATTGTGATGGTTGCAATTGTCTAAATTGTCATAATAACGTGGATAATGAGGCTGCCAGACAGGAGGCTGTTGGAATAACATTGGAACGCAACCCAAATGCTTTCAAACCAAAAATTGCTAGCAGTCCACAAGAACCACGAGATTCTAAGGAAGATATGTCTGAAATTCAAGTAATAGGAAAGCACAATAAAGGATGTCACTGTAAGAAATCAGGTTGTCTTAAGAAGTATTGTGAGTGCTTCCAAGCCAATATCCTCTGCTCTGAAAATTGTAAATGCATGGACTGCAAGAATTTTGAAGGAAGTGACGAAAGAAGAGCAATTTTTCATGAAGAGGATAATCTAGTTCACATCAGACAAAAAATTAATGCTGTCATTAGTGGAGCTGTTGGATCCTTAGGCTATGGAACCCACATAACACCCAAGAAGAGAAGAATTCAGGAAATATTTTCTGGCAAATCAGGCATAGCTCAAACTGTTAACATGACTGCTCAATACCAACAGGAAATTGATCCTATAGCTTCATCACCATCTCTGTCCACGTCCTTTGTCTCTGACATTTCCAACACAAGAATTTCAGGGTCTTCAAGATCTACATACAAGTCTGTATTGGCGGATGTCCTCCAGACACAGAATGTGAAGAATCTCTGTTCACTTTTTGTTGTTCTCTCTAGAGTAGCTGCGAAGACAAATGCAGAAACGAGAGACAAAGTAGATCGGCAAATAGGGACTGGGAAATTTGAAGCTTCTATTGCTTCGTCAGCTCAATCACCGCAAGAAACTAGAGATAACCACAAGCCTGATTGTGATGATCACATAAATAAAGATGAAGCAAATGCAGTTGATATTGACAATTGTAATAGACCATTGTCACCAGAAACACTAGCATTGATGTGCAATGAACAAGATGATATGGTTTTTGGTGATGGTTCTGCAAATGGAGTGGCATGCAACAGTACTTATCAAAACATGATTCAAAAGTCAGCTAATTCTGATGAATGCACTGATGTTTATGGAGAGCAGGAACGGCTTGTCCTGACCAAGTTCTGGGATGTTCTTCGCGGACTCGTTACTCTTGGTAGCATAAAAGAAACAATGTGCTCTTCATTAGCCAGGAAAGAGGTGGGAATCAGGAAAGAACCTGCAGACAATGGCAATGGTGGCACTGAAACTGACATAGGGGCTGAGAAGGGAATTCGTAGCAACTGCGTGGCAAATTGCCCCATTCCAGCGGTCATTGAAATATCTCAGACCAACTATGCAGTAACTAATGGGCATGGTAATAATGATATTTCATTGAGGTCGCCTGCAAATTTGAATAACTAG	1818	0.4367	MEQSETTLDLAPRKLARQLDFTAVSGGPAHLKLPLPTPQSLSQPILRPPLQPQPPRSPSQLQLDLQSPGQRLRLYSPPQGQQQRTTHSQVMPQLQAPRPQLVSPVHRFPHPVQKLPVKMKQESPRSQPRNNVELKDGTPKKQKQCNCKNSRCLKLYCECFAAGIYCDGCNCLNCHNNVDNEAARQEAVGITLERNPNAFKPKIASSPQEPRDSKEDMSEIQVIGKHNKGCHCKKSGCLKKYCECFQANILCSENCKCMDCKNFEGSDERRAIFHEEDNLVHIRQKINAVISGAVGSLGYGTHITPKKRRIQEIFSGKSGIAQTVNMTAQYQQEIDPIASSPSLSTSFVSDISNTRISGSSRSTYKSVLADVLQTQNVKNLCSLFVVLSRVAAKTNAETRDKVDRQIGTGKFEASIASSAQSPQETRDNHKPDCDDHINKDEANAVDIDNCNRPLSPETLALMCNEQDDMVFGDGSANGVACNSTYQNMIQKSANSDECTDVYGEQERLVLTKFWDVLRGLVTLGSIKETMCSSLARKEVGIRKEPADNGNGGTETDIGAEKGIRSNCVANCPIPAVIEISQTNYAVTNGHGNNDISLRSPANLNN.	606

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00738	605	MobiDBLite	consensus disorder prediction	41	56	-	-
	Seca4g00738	605	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	228	262	IPR005172	-
	Seca4g00738	605	Pfam	Tesmin/TSO1-like CXC domain, cysteine-rich domain	142	177	IPR005172	-
	Seca4g00738	605	SMART	CXC_2	140	180	IPR033467	-
	Seca4g00738	605	SMART	CXC_2	225	266	IPR033467	-
	Seca4g00738	605	PANTHER	TESMIN/TSO1-RELATED	47	519	IPR028307	-
	Seca4g00738	605	MobiDBLite	consensus disorder prediction	29	91	-	-
	Seca4g00738	605	MobiDBLite	consensus disorder prediction	57	91	-	-
	Seca4g00738	605	ProSiteProfiles	CRC domain profile.	141	265	IPR005172	-
	Seca4g00738	605	MobiDBLite	consensus disorder prediction	111	144	-	-
	Seca4g00738	605	MobiDBLite	consensus disorder prediction	405	438	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00738	Seca-Chr4	12488573	12494337	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g00738	13	539	CPP Transcription Factor Family	AT4G29000	44.343	1.21e-132	399

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	CPP	Seca4g00738		TCR	3.2e-12	No_clan

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00738	-		K21776	gmx:100811459	877.856

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Seca4g00738	4	12488573	12494337	Seca4g00738	4	12488573	12494337	ECH