Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00723 ATGATGGTTCTTTCTCTATTTACCAATGTTGAAGCCCAAGGTAGGCAAGAAGAACAGAACATGCCTGATTTACCCCAAAGTGTCCATCCAAGCAAAGGGATTGTAATAATAGCCCTTTCCATAATGTTTGCCATAACATTTCTCTTACTTGCCTATGTTAAATTCTGTCGTGTTAACCAAAACACCAATCTCCAAAACACTCATTTACTACCTAGATCAAGGTCTAGATTTTCTGGGATTGACAGAGAAGTAATTGAAACACTCCCTTTCTTCAAGTTTTCTTCCCTTAAGGGATTCAAACAAGGCCTAGAATGCACTGTTTGTCTATCCAAATTTGAGGACACAGAGATTCTCAGATTGTTACCAAAGTGCAAGCACGCTTTCCACATGAATTGCATTGACAAGTGGCTTGAAAACCACTCTACATGCCCTCTTTGCAGGTACAGGGTTGAAGCAGGGGACATCAAGAATCTCAACTATTCATTGAGCTCAAGGTTCATGAGAGTTCCTTCAAATCTAACTGAGGACTCAAATCTTGAAATCTTTGTCCAGAGGGAGCCATCTTATAGTAGAGGGTCATCAAAAAGAAGCAAGAACAAGAAAGAAGAACTAGTTCTTGATCTTGATCAAGAAGGTGATAATTATAATAGAAAGTGGAAACATGTGAACATGATCAATCATAGAATAGTTATCAGTGATGTTGTTACTAGGAGGAGGTGGAGTGATCTTAATTCTTCAGACTTGTTATCTTTGAACTGTGAGATGCTGAATGATATGTGTAGCACAAGATTCTCTTTCTCTCCTTTGGAATCCCCCAATGGTGGAAGGTTTCAACAAGGGACTTCAAATGTTCCTTCTACTTCTTATGAGGAAGAAAATTCATTTACGGCACTGAATCCAGCTGAGAAGAGGTCCATGTCAGAGATTGCGAATGTTCCAAGGTTTGTGGAAATTGGAAAAAGGAATAGGATCAGAGAATGTGTTGGAAGCGAAGAGAGGGTGTGGAGGATTTGGTTGCCAATTGCGCGAAGAACAGTACAATGGTTTGCAAGACAAGAAAGAAATCCAGTTGAATTACAACACAAACCTTTAGCTTCAAACGTTTGA 1107 0.3939 MMVLSLFTNVEAQGRQEEQNMPDLPQSVHPSKGIVIIALSIMFAITFLLLAYVKFCRVNQNTNLQNTHLLPRSRSRFSGIDREVIETLPFFKFSSLKGFKQGLECTVCLSKFEDTEILRLLPKCKHAFHMNCIDKWLENHSTCPLCRYRVEAGDIKNLNYSLSSRFMRVPSNLTEDSNLEIFVQREPSYSRGSSKRSKNKKEELVLDLDQEGDNYNRKWKHVNMINHRIVISDVVTRRRWSDLNSSDLLSLNCEMLNDMCSTRFSFSPLESPNGGRFQQGTSNVPSTSYEEENSFTALNPAEKRSMSEIANVPRFVEIGKRNRIRECVGSEERVWRIWLPIARRTVQWFARQERNPVELQHKPLASNV. 369
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00723 368 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 79 155 IPR013083 -
Seca4g00723 368 ProSiteProfiles Zinc finger RING-type profile. 105 147 IPR001841 -
Seca4g00723 368 CDD RING-H2_EL5-like 104 147 - -
Seca4g00723 368 Pfam Ring finger domain 104 147 IPR001841 -
Seca4g00723 368 SUPERFAMILY RING/U-box 84 151 - -
Seca4g00723 368 SMART ring_2 105 146 IPR001841 -
Seca4g00723 368 FunFam RING-H2 finger protein ATL43 80 154 - -
Seca4g00723 368 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 15 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00723 Seca-Chr4 12185086 12186192 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00723 30 355 C3H Transcription Factor Family AT2G20030 42.898 6.37e-79 246
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00723 K10664 - gmx:100816668 454.907