Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00713 ATGAGTGTTGAATTCTCAAATGATCATAGCTCAAGTTCAAACTCATCTGCATCATTTTCTCCCCCACAATCAAAAAAGATAAAACACATAAGAGACTCAAACAAGCACCCAGTTTACCGTGGTGTTCGAATGCGAAATTGGGGGAAATGGGTGTCTGAAATTCGTGAACCAAGGAAGAAATCACGCATATGGTTAGGCACATTCCCTACACCAGAAATGGCAGCAAGAGCACATGATGTAGCTGCTCTTAGCATCAAGGGCAATTCCGCCATTCTCAATTTCCCTGACTTAGTCAACTCTCTCCCACGCCCTGCTTCACTCGCTCCTCGTGATGTTCAAGCCGCTGCAGCAAAAGCTGCTCACATGGAATTCCCTTCTTCAACTTCAACAACATTCTCTTCATCGTCCTTGTTCTCTGCTTCAGATGAATTGAGCGAAATAACAGAGCTTCCTCGGTTGAAAAATAGTGATGAGTGTGGAGAGTTGGATAAGGAGTTTGTGTTGATGGATTCTATTGATGCTTGGAATTGGATGTATCAGCCTCCATGGTTGCAGAACATGGAAGATGTTCTTTGCATAACTAGTTTTCAATTTTCACATCAAGAGTAA 609 0.4269 MSVEFSNDHSSSSNSSASFSPPQSKKIKHIRDSNKHPVYRGVRMRNWGKWVSEIREPRKKSRIWLGTFPTPEMAARAHDVAALSIKGNSAILNFPDLVNSLPRPASLAPRDVQAAAAKAAHMEFPSSTSTTFSSSSLFSASDELSEITELPRLKNSDECGELDKEFVLMDSIDAWNWMYQPPWLQNMEDVLCITSFQFSHQE. 203
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00713 202 Pfam AP2 domain 37 87 IPR001471 GO:0003700|GO:0006355
Seca4g00713 202 CDD AP2 39 97 IPR001471 GO:0003700|GO:0006355
Seca4g00713 202 MobiDBLite consensus disorder prediction 1 23 - -
Seca4g00713 202 PRINTS Ethylene responsive element binding protein signature 61 77 IPR001471 GO:0003700|GO:0006355
Seca4g00713 202 PRINTS Ethylene responsive element binding protein signature 39 50 IPR001471 GO:0003700|GO:0006355
Seca4g00713 202 FunFam Ethylene-responsive transcription factor 2 37 96 - -
Seca4g00713 202 SUPERFAMILY DNA-binding domain 38 96 IPR016177 GO:0003677
Seca4g00713 202 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 13 160 - -
Seca4g00713 202 SMART rav1_2 38 101 IPR001471 GO:0003700|GO:0006355
Seca4g00713 202 MobiDBLite consensus disorder prediction 1 35 - -
Seca4g00713 202 Gene3D AP2/ERF domain 38 96 IPR036955 GO:0003700|GO:0006355
Seca4g00713 202 ProSiteProfiles AP2/ERF domain profile. 38 95 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00713 Seca-Chr4 12090789 12091397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00713 11 189 AP2-EREBP Transcription Factor Family AT5G11590 59.596 1.20e-66 202
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g00713 AP2 1.9e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00713 K09286 - tcc:18587975 234.958
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00713 4 12090789 12091397 Seca4g00713 4 12090789 12091397 ECH