Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00701 ATGGAAGCACAAGAGTATAATTTCCAGAGTAGCAGCAACTTCTGTTCCCAATTCCCTTCGGACAACATGACAACCACCAACGTTAACGCCTCTTCCGACCACTTCATCGTGGAGGACCTCTTCGACTTCTCCAACGACGACGACGCTGCCATTACCGACGCCACCTTCGATTCTCTTCCCGCCAATTCCATCGACGATTCTCCACCTCTCGATCATTCCACCATCAATTCCAATTTCCTCCCCGACATTTCCTCCCGGAATTCCACCGACCCTCATTTCTCCAGTGACCTCTCCGTTCCGCAGTATGATGAACTTGCGGAGCTGGAATGGCTTTCAAAATTTGCGGAGGAATCATTTTCTAGCGAGGACTTGCAGAAACTGCAACTGATATCCGGAATGAAAGCCCAAAACGACGCCGTATCAGAAACCCGTGAGCCCAACCCTGTTATATTTAACCCACAAGTGTCTGTTCCAGCAAAGGCCCGGAGCAAGCGGTCTCGTGGGCCCCCGTGTAATTGGACCTCTCGCCTTCTTGTTCTCTCCCCAACAACAACATCATCACCACCATCCTCTTCTCAGTCTGATACTGTTACCGCACCAAAGAAGTCTACACCGAGAAAGAGGGACACTGCAGATGGAGGGGAGGGCCGCAAGTGTCTGCATTGTGCCACGGATAAGACGCCGCAGTGGCGGACTGGGCCCATGGGCCCCAAAACGCTCTGTAATGCGTGTGGTGTCAGGTATAAGTCGGGCCGGCTGGTTCCCGAGTATAGGCCCGCGGCGAGCCCAACGTTCATGCTGACGAAGCACTCCAACTCACACCGTAAGGTGATGGAGCTCCGGCGCCAAAAGGAGATGATGAAGGCCCAGCAACAGCAGTTACTGCAAATGCAACATCATCAGAACATGATGTTTGATGTATCATCCAACGGTGATGATTACTTGATTCATCAACACGTGGGACCGGATTTCACACACATGATCTAG 987 0.5208 MEAQEYNFQSSSNFCSQFPSDNMTTTNVNASSDHFIVEDLFDFSNDDDAAITDATFDSLPANSIDDSPPLDHSTINSNFLPDISSRNSTDPHFSSDLSVPQYDELAELEWLSKFAEESFSSEDLQKLQLISGMKAQNDAVSETREPNPVIFNPQVSVPAKARSKRSRGPPCNWTSRLLVLSPTTTSSPPSSSQSDTVTAPKKSTPRKRDTADGGEGRKCLHCATDKTPQWRTGPMGPKTLCNACGVRYKSGRLVPEYRPAASPTFMLTKHSNSHRKVMELRRQKEMMKAQQQQLLQMQHHQNMMFDVSSNGDDYLIHQHVGPDFTHMI. 329
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00701 328 CDD ZnF_GATA 218 265 IPR000679 GO:0006355|GO:0043565
Seca4g00701 328 PANTHER GATA TRANSCRIPTION FACTOR 27 293 - -
Seca4g00701 328 MobiDBLite consensus disorder prediction 201 219 - -
Seca4g00701 328 PIRSF Txn_fac_GATA_plant 6 309 IPR016679 GO:0003677|GO:0005634|GO:0045893
Seca4g00701 328 Gene3D - 209 294 IPR013088 GO:0006355|GO:0008270
Seca4g00701 328 ProSiteProfiles GATA-type zinc finger domain profile. 213 249 IPR000679 GO:0006355|GO:0043565
Seca4g00701 328 ProSitePatterns GATA-type zinc finger domain. 219 244 IPR000679 GO:0006355|GO:0043565
Seca4g00701 328 MobiDBLite consensus disorder prediction 138 219 - -
Seca4g00701 328 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 214 277 - -
Seca4g00701 328 FunFam GATA transcription factor 208 295 - -
Seca4g00701 328 Coils Coil 277 297 - -
Seca4g00701 328 Pfam GATA zinc finger 219 252 IPR000679 GO:0006355|GO:0043565
Seca4g00701 328 SMART GATA_3 213 263 IPR000679 GO:0006355|GO:0043565
Seca4g00701 328 MobiDBLite consensus disorder prediction 61 83 - -
Seca4g00701 328 MobiDBLite consensus disorder prediction 176 200 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00701 Seca-Chr4 11814568 11816429 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00701 28 328 C2C2-Gata Transcription Factor Family AT4G32890 49.051 2.87e-93 278
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-GATA Seca4g00701 GATA 2.9e-15 CL0167
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00701 - - gmx:100776588 421.779
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00701 4 11814568 11816429 Seca4g00701 4 11814568 11816429 ECH