Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00700 ATGATGGCTGTGAGTTCGGCCTGCAAAGATGGGAGCAAGCTGGCAATGGACAACGGCAAGTATGTGAGGTACACACCAGAGCAGGTTGAAGCTCTGGAGAGGCTCTACCATGAATGCCCCAAACCCAGTTCCCTTCGCCGCCAGCAACTCATCAGAGAGTGCCCCATTCTCTCCAATATTGAACCAAAACAGATCAAGGTTTGGTTCCAAAACAGAAGGTGCAGAGAGAAGCAGCGGAAAGAATCGTCACGGCTGCAAGCAGTGAACAGGAAGCTAACAGCAATGAATAAATTACTGATGGAGGAAAACGACAGATTGCAGAAGCAGGTGTCACAGCTCGTGTATGAGAACAGCTTTTTCCGCCAACAGACACAGAATGCGACCCTTGCCACCACAGACACGAGCTGTGAGTCGGTGGTAACGAGCGGTCAGCGCCACCTAACACCGCAGCATCCACCAAGGGATGCAAGCCCTGCAGGACTTTTGTCCATTGCAGAGGAGACTTTAGCAGAGTTTCTTTCAAAGGCCACTGGAACTGCTGTGGAGTGGGTCCAAATGCCTGGGATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCAATTTCTCATGGTTGCCCTGGAGTGGCTGCACGTGCCTGCGGCCTTGTGGGTCTTGAACCTGCCAGGGTTGCCGAAATCCTCAAAGATAGGCTATCATGGTTTCGTGATTGCCGAACTGTGGATGTTCTGAATGTGATGTCCACTGGAAATGGAGGAACCATTGAACTCCTTTACATGCAGTTGTATGCGCCAACAACTTTAGCACCAGGTCGTGACTTCTGGTTGCTGCGCTACACATCACTTTTGGAGGATGGTAGTCTTGTGGTCTGTGAAAGATCACTTAACAACACTCAGAATGGTCCTGCTATGCCCCCAGTGCAGCATTTTGTTAGAGCTGACATGCTGCCAAGTGGATACCTGATTAGACCTTGTGAAGGAGGGGGATCCATTATTCATATTGTTGATCATATGGTTTTAGAGCCCTGGAGTGTACCTGAAGTTTTGCGCCCACTTTATGAGTCATCAATGCTTCTTGCTCAGAGGACAACTATGGCGGCTTTGCGTCACTTGAGGCAGATTTCTCAAGAAATTTCTCAGCCAAGTGTTACAGGATGGGGAAGAAGGCCTGCAGCTCTACGAGCACTTAGTCAGAGATTGAGCAAGGGCTTTAATGAAGCTGTGAATGGGTTTGCAGATGATGGTTGGTCCATGTTAGAGAGTGATGGCATTGATGATGTCACCCTTCTTGTGAATTCATCACCTAGCAAATTGTTGGGAGTAAACCTTGGCTATAACAATGGATTTCCATCTATTAGCAGTTCTGTGCTATGTGCTAAAGCATCCATGTTGTTACAGAATGTCCCTCCAGCTATTCTTCTAAGATTCTTGAGGGAACACAGATCAGAATGGGCAGATAGCAGTATTGATGCTTACTCAGCTGCTACCATTAAAGCTGGTCCCTGTAGCTTGCCAGGGGCCCGAGCAGGAGGTTTTGGGGGTCAGGTTATTCTTCCACTAGCTCACACAATTGAGCATGAAGAGGCAAGTTATTTGCTCCTATTCATGGAGGTGATTAAGCTTGAAAACATGGGCTACTATAGGGATGACATGACTATACCTGGTGACATTTTCCTCTTGCAACTTTGTAGTGGAGTGGATGAGCATGCAGTTGGCACCAGTGCAGAACTTGTTTTTGCTCCAATAGATGCATCTTTCTCTGATGATGCACCCATTCTACCTTCTGGTTTTCGCATCATACCTCTTGATTCTAGCACGGATGGTGCTAGTCCAAACCGTACACTTGATCTTGCTTCTGCACTTGATGTTGGAACCACAGCAAACAAAGCATCTGGTGACAATTCAGGTCATTCTGGGAGCACAAAATCTGTAATGACAATAGCATTCCAGTTTGCATTTGAAGTCCACCTTCAAGATAATATAGCAACTATGGCACGACAATATGTCCGAAGCATTATTGCATCTGTTCAGAGGGTTTCATTAGCACTCTCTCCTTCGCGTTTTGGTTCTCACAATGCCTTTAACTTACCACCTGGCACTCCTGAGGCACAGACACTTGCTCGTTGGATCTGTAACAGCTATAGGTTCTATCTAGGAGTAGAATTACTAAAGTGTGAAGGCAGTGAGTCCATTCTCAAATCCCTTTGGCATCATTCAGATGCAGTTTTGTGCTGCTCTTTGAAGGCATTACCTGTTTTCACGTTTGCAAATCAAGCTGGACTTGACATGCTAGAAACAACCCTGGTTGCTCTTCAAGACATCACCCTGGAAAAAATCTTTGATGACAATGGAAAGAAAACTCTGTGCTCCGAGTTCCCCCAGATAATGCAGCAGGGTTTCATGTGTATTCAAGGTGGGATCTGTTTGTCAAGCATGGGGAGGCCAATATCCTATGAGAGAGCAGTAGCATGGAAAGTGCTAAACGAAGAAGAATCAGCTCATTGCATCTGTTTTATGTTCATCAATTGGTCTTTTGTCTGA 2538 0.4649 MMAVSSACKDGSKLAMDNGKYVRYTPEQVEALERLYHECPKPSSLRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKESSRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENSFFRQQTQNATLATTDTSCESVVTSGQRHLTPQHPPRDASPAGLLSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCPGVAARACGLVGLEPARVAEILKDRLSWFRDCRTVDVLNVMSTGNGGTIELLYMQLYAPTTLAPGRDFWLLRYTSLLEDGSLVVCERSLNNTQNGPAMPPVQHFVRADMLPSGYLIRPCEGGGSIIHIVDHMVLEPWSVPEVLRPLYESSMLLAQRTTMAALRHLRQISQEISQPSVTGWGRRPAALRALSQRLSKGFNEAVNGFADDGWSMLESDGIDDVTLLVNSSPSKLLGVNLGYNNGFPSISSSVLCAKASMLLQNVPPAILLRFLREHRSEWADSSIDAYSAATIKAGPCSLPGARAGGFGGQVILPLAHTIEHEEASYLLLFMEVIKLENMGYYRDDMTIPGDIFLLQLCSGVDEHAVGTSAELVFAPIDASFSDDAPILPSGFRIIPLDSSTDGASPNRTLDLASALDVGTTANKASGDNSGHSGSTKSVMTIAFQFAFEVHLQDNIATMARQYVRSIIASVQRVSLALSPSRFGSHNAFNLPPGTPEAQTLARWICNSYRFYLGVELLKCEGSESILKSLWHHSDAVLCCSLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDNGKKTLCSEFPQIMQQGFMCIQGGICLSSMGRPISYERAVAWKVLNEEESAHCICFMFINWSFV. 846
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00700 845 CDD bZIP 72 111 - -
Seca4g00700 845 ProSiteProfiles START domain profile. 154 356 IPR002913 GO:0008289
Seca4g00700 845 ProSiteProfiles 'Homeobox' domain profile. 15 79 IPR001356 GO:0003677
Seca4g00700 845 Gene3D - 12 86 - -
Seca4g00700 845 SMART HOX_1 17 83 IPR001356 GO:0003677
Seca4g00700 845 Gene3D - 198 379 IPR023393 -
Seca4g00700 845 Pfam START domain 164 372 IPR002913 GO:0008289
Seca4g00700 845 SUPERFAMILY Bet v1-like 163 374 - -
Seca4g00700 845 SMART START_1 163 373 IPR002913 GO:0008289
Seca4g00700 845 Coils Coil 85 116 - -
Seca4g00700 845 FunFam Homeobox-leucine zipper protein REVOLUTA 20 75 - -
Seca4g00700 845 Pfam MEKHLA domain 704 844 IPR013978 -
Seca4g00700 845 SUPERFAMILY Homeodomain-like 19 81 IPR009057 -
Seca4g00700 845 CDD START_ArGLABRA2_like 158 373 - -
Seca4g00700 845 Pfam Homeodomain 20 78 IPR001356 GO:0003677
Seca4g00700 845 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 16 845 IPR044830 GO:0003700
Seca4g00700 845 CDD homeodomain 20 80 IPR001356 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00700 Seca-Chr4 11700872 11707992 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00700 16 845 Homeobox Transcription Factor Family AT4G32880 80.263 0.0 1394
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Seca4g00700 START 4.4e-52 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00700 K09338 - gmx:100815727 1621.68
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00700 4 11700872 11707992 Seca4g00700 4 11700872 11707992 ECH