Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00699 ATGGCTAAAGAAACTCCAACAACAACGTTTTCTTCAAAGTCTCTCATTTTTATCATGTGTCTCTGCTTCTTGTTCATGCTCAACTTCCACTCATCCCATGGAGAAGAAGAACATGAGCTCCTGTTATCCTTCAAAGCTTCCATCCACAACGACCCACTTCACACACTCTCCAACTGGGTCAGTTCCTCTGCCACTCTCTGCAAGTGGCATGGCATCATCTGTGACAACTCTTCCCATGTTAACGCCATGGTGCTCTCAGGGAAAAACATCTCTGGCGAGGTTTCTTCCACCATTTTTCAACTGCCACACGTTACAAGCCTTGACCTTTCCAACAATCAGCTTGTTGGGGAAATCTCTCTCATCAACGCTCCTTCTCTCTCCCCACTCCGTTACCTCAATCTCAGCAATAACAACCTCACGGGTTCTCTGCCTCAATCCTTGTTTTCCGCGTCGTTTTTCAACCTCGAAACTCTGGATCTCTCCAACAACATGTTTTCAGGGAAGATACCAGACCAAATTGGATTTCTCTCCAGCCTAAGGTACCTTGATCTTGGAGGAAACGTTTTGGTGGGAAAGATTCCAAATTCCATCATCAACATGACCACCTTACAGTACCTGACTTTAGCTTCAAATCAATTAGTGGGTGAAATCCCTGCAGAGATAGGCCTAATGAAAAGCTTGGAGTGGATTTATTTGGGTTACAACAACCTTTCAGGTGAGATACCAAGTAGCATTGGGGAGTTATTTTCTTTGAACCACCTTGATCTTGTTTACAACAACCTCACTGGAAAAATTCCTGAATCTCTTGGAAACCTCACTGGTCTTCAATATCTCTTCCTCTACCAGAACAAGCTCACAGGTCAAATTCCTCCATCCATTTTCGAATTGAGAAAGCTCATTTCTCTTGATCTCAGTGATAACTCTCTTTCTGGTGAGATTTCCGAGCTTGTGGTCAATCTCCAGAGGCTGGAGATTCTTCACCTTTTCTCAAACAACTTCACCGGGAAGATACCAAAAGCTCTATCATCTCTGCCTCGCCTTCAGGTTCTTCAGCTCTGGTCAAACAGATTAACTGGTGAGATTCCAGAGGAGCTAGGAAAGCATAGCAACCTCACTGTTTTGGACCTCTCTTCCAACAATCTCACAGGGAATATTCCAAATAGCTTATGTGCCTCTGGAAATCTCTACAAGCTCATCCTCTTCTCCAACTCTTTCAAAGGAAAAATCCCAAATAGCTTAAGCTCTTGCAGAAGCTTAGGCAGAGTGCGCCTCCAAAACAACAAGCTCTCTGGTGAATTACCACCGGAAATGACCAAACTGCCACAGATATACTTCTTGGATATCTCTGGTAACGAACTTTCTGGAAGGATCGATGATAGAGAGTGGAACATGCCGGCGCTTCAAATGCTCAGTTTGGCTAATAACAACTTCTCAGGGAAGCTACCAGACTCTTTTGGTAGTAACAAACTAGAGGATTTGGATGTATCACAGAATCAATTCTCAGGGTATATTCCAATCGGTTTCAAAACGTTATCAGAACTCGTGCAATTGAAGCTAAGCAATAACAACCTCTTCGGGAACATTCCAGAAGAACTCTGTGAATGCAAGAAGCTTGTTGTTCTAGACCTAAGTCAGAATCAACTCACCGGTCAGATTCCGGTCAACCTCGCCGGCATGCCGGTGCTCGGAATGCTTGACCTATCGGAAAATGAATTATCCGGTGAGATTCCAAAGAATTTAGGAAGTGTGGAATCTCTTGTTCAGGTGAACATTTCACACAACAGATTTCATGGAAGTTTACCTTCTACTGGAGCTTTCCTTGCCATCAATGCCAGTGCGGTTACCGGTAACAGCCTCTGTGACCGTGACGGTGACGTTTCAAGCGGTTTGCCACCGTGCAAAAGCGATCAGAATCCAACTTGGTTGTTCGTTTTGCTGTGTTTTCTACTCGGATTGGTTGCGTTTGCTGCAGCTGCTGTTCTCGTCGTTTACGTTAAACGACGAAGGAGTAATTTGGAGATGCGAAGAGTGGAAAACGAAGACGGCACTTGGGAGATGCAGTTTTTCGATTCCAAGGCATCGAAAGTGATAAGCATAGACGACGTTTTGTCGTCGGTTAAAGAAGGGAAAGTGATTTCGAAAGGAAGGAACTGGGTTTCATACGAAGGGAAGTGCATGCGAAACGACATGCAGTTTATGGTGAAAGAAATGGGCGATCCGAATTCTCTTCCGCTGAGTTTTTGGGACGATATGGTGAAGTTTGGGAAGCTAATTCGTCACCCGAATATCGTTAAACTTGTTGGAATATGTAGGTGTGGTAAGAGAGGGTACTTGGTGTACGAGAATGAAGAGGGAAACAATTTAACCCAAATACTCAACGGTTTGAGTTGGCAACGGCGACGGAAAATTGCCGTGGGGATTGCAAAAGCACTCAAGTTCTTGCATTGTAACGGTTCATGGATCGGTTTGGTTAATGAGGTGTCACCGGAGATAGTTTTGGTCGACGGCAAAGGCGTCCCTCGCCTGAAGCTCAACCCTCCCGGAATGGCATGTTTGGATGTCAAGTCACCCTACATTGCCCCAGAGGCAAGGATGAGGAAAGATGTGACAGAGAAGAGTGAGATATATGGATTGGGAGTTATACTGATTGAGTTGTTGACGGGAAGAAGCCCGATGGATACAGAAGGCATGCAGAATAGCATTGTGGAGTGGGCCCGTTACTGTTACTCAGACTGTCATCTTGACACGTGGATAGACCCTGTGATGAAGGGTGGAGATGCAAATGCAGTGGGATATCAGAACGACATCGTTGAGATGATGAATCTTGCACTGCACTGTACCGCAACTGATCCCACCGCAAGGCCATGCGCGAGAGACGTACTCAAAGCCCTAGAGACTGTTCACAGTACCAACACTTTTTGTTGA 2925 0.4523 MAKETPTTTFSSKSLIFIMCLCFLFMLNFHSSHGEEEHELLLSFKASIHNDPLHTLSNWVSSSATLCKWHGIICDNSSHVNAMVLSGKNISGEVSSTIFQLPHVTSLDLSNNQLVGEISLINAPSLSPLRYLNLSNNNLTGSLPQSLFSASFFNLETLDLSNNMFSGKIPDQIGFLSSLRYLDLGGNVLVGKIPNSIINMTTLQYLTLASNQLVGEIPAEIGLMKSLEWIYLGYNNLSGEIPSSIGELFSLNHLDLVYNNLTGKIPESLGNLTGLQYLFLYQNKLTGQIPPSIFELRKLISLDLSDNSLSGEISELVVNLQRLEILHLFSNNFTGKIPKALSSLPRLQVLQLWSNRLTGEIPEELGKHSNLTVLDLSSNNLTGNIPNSLCASGNLYKLILFSNSFKGKIPNSLSSCRSLGRVRLQNNKLSGELPPEMTKLPQIYFLDISGNELSGRIDDREWNMPALQMLSLANNNFSGKLPDSFGSNKLEDLDVSQNQFSGYIPIGFKTLSELVQLKLSNNNLFGNIPEELCECKKLVVLDLSQNQLTGQIPVNLAGMPVLGMLDLSENELSGEIPKNLGSVESLVQVNISHNRFHGSLPSTGAFLAINASAVTGNSLCDRDGDVSSGLPPCKSDQNPTWLFVLLCFLLGLVAFAAAAVLVVYVKRRRSNLEMRRVENEDGTWEMQFFDSKASKVISIDDVLSSVKEGKVISKGRNWVSYEGKCMRNDMQFMVKEMGDPNSLPLSFWDDMVKFGKLIRHPNIVKLVGICRCGKRGYLVYENEEGNNLTQILNGLSWQRRRKIAVGIAKALKFLHCNGSWIGLVNEVSPEIVLVDGKGVPRLKLNPPGMACLDVKSPYIAPEARMRKDVTEKSEIYGLGVILIELLTGRSPMDTEGMQNSIVEWARYCYSDCHLDTWIDPVMKGGDANAVGYQNDIVEMMNLALHCTATDPTARPCARDVLKALETVHSTNTFC. 975
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00699 974 SUPERFAMILY RNI-like 289 601 - -
Seca4g00699 974 Gene3D Ribonuclease Inhibitor 298 623 IPR032675 -
Seca4g00699 974 ProSiteProfiles Protein kinase domain profile. 706 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00699 974 Gene3D Ribonuclease Inhibitor 187 297 IPR032675 -
Seca4g00699 974 Gene3D Ribonuclease Inhibitor 33 186 IPR032675 -
Seca4g00699 974 Pfam Protein kinase domain 753 962 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00699 974 ProSiteProfiles Leucine-rich repeat profile. 128 150 IPR001611 GO:0005515
Seca4g00699 974 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 248 315 - -
Seca4g00699 974 Gene3D Phosphorylase Kinase; domain 1 669 781 - -
Seca4g00699 974 SUPERFAMILY Protein kinase-like (PK-like) 705 968 IPR011009 -
Seca4g00699 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 670 782 - -
Seca4g00699 974 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 235 963 - -
Seca4g00699 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 151 244 - -
Seca4g00699 974 FunFam Probably inactive leucine-rich repeat receptor-like protein kinase 326 629 - -
Seca4g00699 974 SUPERFAMILY L domain-like 36 362 - -
Seca4g00699 974 SMART LRR_typ_2 126 150 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 369 392 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 559 583 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 224 248 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 464 487 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 272 296 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 511 535 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 344 368 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 176 200 IPR003591 -
Seca4g00699 974 SMART LRR_typ_2 101 124 IPR003591 -
Seca4g00699 974 Pfam Leucine rich repeat N-terminal domain 37 75 IPR013210 -
Seca4g00699 974 Gene3D Transferase(Phosphotransferase) domain 1 784 973 - -
Seca4g00699 974 ProSiteProfiles Leucine-rich repeat profile. 370 392 IPR001611 GO:0005515
Seca4g00699 974 Pfam Leucine rich repeat 345 404 IPR001611 GO:0005515
Seca4g00699 974 Pfam Leucine rich repeat 129 189 IPR001611 GO:0005515
Seca4g00699 974 Pfam Leucine rich repeat 489 548 IPR001611 GO:0005515
Seca4g00699 974 Pfam Leucine rich repeat 250 309 IPR001611 GO:0005515
Seca4g00699 974 Pfam Leucine Rich repeat 101 114 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00699 Seca-Chr4 11690069 11694142 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00699 7 965 Receptor kinase-like Gene Family AT2G25790 52.778 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Singleton Seca4g00699 Pkinase 4.1e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00699 - - gmx:100777118 1431