Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00690 ATGGAGCACAATGAATGTCAACCACTTGAAATTGATGAACCTAAAGATATTTTTTTAGGTCAAGTTGAATATAGCAAAGATGAAGCTTATAATTTGTACCAAGAACATGCATTCAGAATGGGTTTTAGTGTCAAAAGAGGGAGAGAGTTGCATTATGATATTGAGAAAAAGAACATACATTTGAAAGATTATTGTTGTTCCGAGCAAGGGTTTAAGAATAATGAACCTCAAGGTGAAGTGACTTATGAAAGAGTAGATTCAAGAACCAGTTGCCAAGCTATGGTGCGATTTAATGTGAGTAAGGAAGGAGTGTGGAAAATTACAAAGATGGAATTAAATCACAACCATGACTTTGTGCCACCAGAGCAGAGACATTTATTATGTTCTATGAGAAATATATCCAATGCCAAAAGAGACCTCATAAAGTCCATGGTGAATATTGGTATGAGAGTTACTAATATTTGGAGTTATTTAGGGGAAGAGGTTGGTGGATTTGATAACCTCGGTATAACAATGAAAGATATGCATAATTATGTTTACTCTGAAAAGTTGAAATTAATTTATGTTGTTGATGCTCAGGCTTTAGTGAATCACTTACAAAGTAGACAAGAACAGGATGCAATGTTCTACTATAGTGTTCAGTTAGACCAGGAATCACGTTTGACTAATGTATTTTGGAGAGATGGTAAATCTAAGGTTGATTATGATTGCTTTGGGGATATTGTTGTTTTATACACCACTTATCGTACTAACAAATATAACTTGATTTGTGCTCCCTTTGTTGGTGTAAATCATCATTGGCAAAATGTCATGTTTGGTTGTGCCTTACTTTCTGATGAAACTTCAGCTTATTTTTCTTGGTTATTAAAAGTGTTTTTAGAAAGCATGGAAAACAAACAATCCAAAACAATTTTTACAGATCAAGATGCAGCTATGACTAAAGCAATTGGAGAGGTAATGTTAAATACATGTCATCGATTATGCTTATGGCATATAGCTAAAAATGCTCCTTCTCATTTGGGTTCTCTTAATTCTAATTATAAGTTTCAAAGCTTATTCAATAAATGCATGAAAGGTTGTGACTCAGAAGAAGAATTTCAAAGCACTTGGGATCAGATGATAAATGAGTACAAACTTCATGATCATCAATGGTTGAGTAATATGTATAAAATTCGTCACAAGTGGATCATTGCTTTTAGCAAGGATATATTCTCTGTTGGTATCAAGCCCTCTCAAAGGAATGAAAGTACAAATAGTGTATTGAGTGAGATTGCAGGAAAAACAACAAGTCTCACACAATTATTATTGGCATTTGAGAAGATGGTGAAAAAGTGGCGGCATTTAGAGGTTGAGAAGGAATTAAAAAACAGTCAAAGTGAGCCTCCTCGTATTATAAATATTAGTGAAACTCTACGACAAGCATCCATGATATATACCCACAAGATCTTTAAATTGTTCTTGAATGAATACTTTATGGAACAGGTGGAAGCACTTCTATGGAGATTCGTGGAAGTGATAATGTGTCATATCATAGCAAACACATAA 1545 0.3385 MEHNECQPLEIDEPKDIFLGQVEYSKDEAYNLYQEHAFRMGFSVKRGRELHYDIEKKNIHLKDYCCSEQGFKNNEPQGEVTYERVDSRTSCQAMVRFNVSKEGVWKITKMELNHNHDFVPPEQRHLLCSMRNISNAKRDLIKSMVNIGMRVTNIWSYLGEEVGGFDNLGITMKDMHNYVYSEKLKLIYVVDAQALVNHLQSRQEQDAMFYYSVQLDQESRLTNVFWRDGKSKVDYDCFGDIVVLYTTYRTNKYNLICAPFVGVNHHWQNVMFGCALLSDETSAYFSWLLKVFLESMENKQSKTIFTDQDAAMTKAIGEVMLNTCHRLCLWHIAKNAPSHLGSLNSNYKFQSLFNKCMKGCDSEEEFQSTWDQMINEYKLHDHQWLSNMYKIRHKWIIAFSKDIFSVGIKPSQRNESTNSVLSEIAGKTTSLTQLLLAFEKMVKKWRHLEVEKELKNSQSEPPRIINISETLRQASMIYTHKIFKLFLNEYFMEQVEALLWRFVEVIMCHIIANT. 515
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00690 514 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 12 492 IPR031052 GO:0006355
Seca4g00690 514 Pfam FAR1 DNA-binding domain 32 119 IPR004330 -
Seca4g00690 514 Pfam MULE transposase domain 242 335 IPR018289 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00690 Seca-Chr4 11584140 11585684 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Seca4g00690 MULE 7.2e-23 CL0219
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00690 - - tpra:123905334 792.341