Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00686 ATGAGTAATGCTAATGGATCCGTTTACATGAACGGTGAGGGTGGAGGTGTCAAGGACCTCTATGGTGAGGACAGAGCCACAGAGGATCAGCTTATCACTCCATGGACTTTCTCAGTGGCCAGTGGCTGCACTTTACTGAGAGATCCACGCTACAACAAAGGGCTAGCTTTCACCGACAAAGAAAGAGATGCTCATTACGTTCGTGGCCTTTTGCCTCCTGCTATCTTCAATCAAGAGCTTCAGGAAAAGAGGTTGATGCACAATCTTCGCCAGTATGAGGTTCCTCTGCATAGGTACATGGCCATGATGGATCTTCAGGTACTTAACTTGCATATAGCACACTCTTTTCAGGAGAGGAATGAAAGGCTGTTTTACAAACTTCTGATTGATAATGTTGAGGAACTTCTTCCTGTTGTTTATACTCCAACGGTTGGAGAAGCCTGCCAAAAATATGGAAGCATTTTCAGGCGTCCTCAGGGTCTATATATCAGTTTGAAGGAGAAAGGCAAGATCCTTGAAGTGCTGAAAAACTGGCCAGAAAAGACTGTTCAAGTTATTGTTGTGACTGATGGTGAGCGTATATTGGGACTTGGAGATCTTGGTTGCCAGGGAATGGGGATTCCTGTTGGGAAACTTTCTCTATATACTGCATTAGGAGGTGTCCGCCCTTCATCATGCTTGCCTATAACGATTGATGTTGGCACAAACAATGAGAAGTTGCTGAATGATGAGTTTTACATTGGGCTTAGACAGAAGAGGGCAACAGGGAAGGAATACCAGGAACTTCTAGATGAGTTTATGCGTGCAGTTAAGCAGAACTATGGGGAGAAAGTTCTTATACAGGTCATATATCAGATTCAACATCTGTTTGAAGATTTCGCTAATCACAATGCATTTGATCTGCTGGAAAGATACAGCTCATCTCATCTTGTTTTCAATGATGATATACAGGGTACAGCATCCGTGGTATTAGCAGGGTTGCTTGCTTCCCTGAAATTAGTTGGGGAAACCTTAGCTGACCATACCTTCTTATTCCTGGGTGCTGGAGAGGCTGGAACTGGTATAGCAGAGCTGATAGCTCTTGAGATTTCAAAGCAGACAAAGGCTCGAGTTGAAGAGACCCGTAAGAAGATCTGGCTTGTGGACTCAAAGGGCCTTATTGTTAGATCTCGTTTGGAATCACTTCAACACTTCAAAAAGCCTTGGGCCCATGAGCATGAACCTGTAAAGGGGCTTCTAGATGCTGTCAAGGCAATCAAGCCCACCGTATTGATTGGATCATCTGGAGTAGGGAAGACATTTACCAAGGAGGTGGTTGAAGCCATGGCATCCTTGAATGAGAAACCGCTCATTCTTGCTCTCTCCAACCCAACTTCACAATCTGAGTGCACAGCTGAAGAAGCTTATACATGGAGCAAGGGTAAAGCAATATTTGCTAGTGGAAGCCCATTTGATCCTGTTGAATATGAAGGAAAAGTTTTTGTTCCCGGACAGGCCAACAATGCTTACATATTTCCTGGTTTTGGTTTGGGTTTGATCATCTCTGGTGCAATCCGCGTACGCGATGAAATGCTCTTGGCAGCCTCTGAGGCTTTGGCTGCACAAGTAGCACAGGAGAACTATGATAAGGGACTGATTTACCCTCCATTCTCAAATATCAGAAAGATATCAGCCCACATTGCTGCTAACGTCGCAGCCAAGGCATATGAACTTGGTCTGGCTTCTCATCTACCTCAACCTAAGGATCTTGTCAAATATGCAGAAAGTTGCATGTACAGCCCAAGCTACCGAAGCTACCGTTGA 1803 0.4465 MSNANGSVYMNGEGGGVKDLYGEDRATEDQLITPWTFSVASGCTLLRDPRYNKGLAFTDKERDAHYVRGLLPPAIFNQELQEKRLMHNLRQYEVPLHRYMAMMDLQVLNLHIAHSFQERNERLFYKLLIDNVEELLPVVYTPTVGEACQKYGSIFRRPQGLYISLKEKGKILEVLKNWPEKTVQVIVVTDGERILGLGDLGCQGMGIPVGKLSLYTALGGVRPSSCLPITIDVGTNNEKLLNDEFYIGLRQKRATGKEYQELLDEFMRAVKQNYGEKVLIQVIYQIQHLFEDFANHNAFDLLERYSSSHLVFNDDIQGTASVVLAGLLASLKLVGETLADHTFLFLGAGEAGTGIAELIALEISKQTKARVEETRKKIWLVDSKGLIVRSRLESLQHFKKPWAHEHEPVKGLLDAVKAIKPTVLIGSSGVGKTFTKEVVEAMASLNEKPLILALSNPTSQSECTAEEAYTWSKGKAIFASGSPFDPVEYEGKVFVPGQANNAYIFPGFGLGLIISGAIRVRDEMLLAASEALAAQVAQENYDKGLIYPPFSNIRKISAHIAANVAAKAYELGLASHLPQPKDLVKYAESCMYSPSYRSYR. 601
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00686 600 SUPERFAMILY Aminoacid dehydrogenase-like, N-terminal domain 20 315 IPR046346 -
Seca4g00686 600 FunFam Malic enzyme 314 600 - -
Seca4g00686 600 ProSitePatterns Malic enzymes signature. 312 328 IPR015884 GO:0004471
Seca4g00686 600 PIRSF ME 17 600 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 Pfam Malic enzyme, N-terminal domain 117 305 IPR012301 GO:0004471
Seca4g00686 600 Gene3D - 40 313 IPR037062 GO:0004471
Seca4g00686 600 PRINTS Malic enzyme signature 343 359 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 PRINTS Malic enzyme signature 219 241 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 PRINTS Malic enzyme signature 446 462 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 PRINTS Malic enzyme signature 123 147 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 PRINTS Malic enzyme signature 183 212 IPR001891 GO:0004470|GO:0004471
Seca4g00686 600 Gene3D - 314 600 - -
Seca4g00686 600 PANTHER MALIC ENZYME-RELATED 16 599 - -
Seca4g00686 600 SMART malic_2 117 306 IPR012301 GO:0004471
Seca4g00686 600 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 316 599 IPR036291 -
Seca4g00686 600 Pfam Malic enzyme, NAD binding domain 316 568 IPR012302 GO:0051287
Seca4g00686 600 SMART Malic_M_2 316 569 IPR012302 GO:0051287
Seca4g00686 600 CDD NAD_bind_1_malic_enz 316 594 - -
Seca4g00686 600 FunFam Malic enzyme 40 313 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00686 Seca-Chr4 11447054 11451477 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00686 K00029 - gmx:100818219 1062.37
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00686 4 11447054 11451477 Seca4g00686 4 11447054 11451477 ECH
Seca4g00686 4 11447054 11451477 Seca4g08708 4 207391858 207397887 ECH
Seca4g00686 4 11447054 11451477 Seca4g11858 4 259229941 259235614 ECH
Seca12g06721 12 159276606 159281482 Seca4g00686 4 11447054 11451477 ECH
Seca4g08708 4 207391858 207397887 Seca4g00686 4 11447054 11451477 ECH
Seca4g11858 4 259229941 259235614 Seca4g00686 4 11447054 11451477 ECH