Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00668 ATGTCCGAAATGCCCCTCTTCATGCTGAAACTCCCGGTTCATTTTCTGCTCTTGCTCAGCGTCACATTGCCCTCCCAAGTAATTTCGCAAACAACAATCACTGAACAAACAATCCTACTCGCCCTAAAACGACAGTTGGGGGATCCACCGTCGCTCCAATCATGGAAACCGTCATCGTCATCGTCCTCGCCGTGCGACTGGCCGGAGATTCGGTGCACCGGCGGCGCCGTCACGGAGCTCCTCCTCCCTAGCAAAGACATCACCGCACAGAAGCTCCCAGCCACAATCTGTGACCTCAAGAACCTCACCAAGCTTGACCTCTCCAACAACTCCATCGCCGGCGAGTTTCCGGCATTTCTGTACAACTGCTCCAATCTCCGGTTCCTCGACCTGTCGCAGAACTACTTCTCCGGCGTCATCCCCGCCGATGTCGACCGTCTCAAAACTCTGACGCACCTCAACCTCGGCGGCAACAGTTTCTCCGGTGATATCCCGGCGGCGATCGGGAGGCTCCGGGAGTTGCAAACGCTGCACCTTTATCAGAACAACTTCAACGGAACCTTCCCCAAGGAAATAGGGAACTTGTCCAATCTTGAAACCCTTGGTATGGCTTATAACGACAAGTTTTTGCCCATGGTGATCCCGTTCGAGTTCGGGAACTTGAAGAGTTTGAGGTTCATGTGGATATCACGGTGTAACTTGATCGGAGAGGTTCCAGAAAGTTTCGGGAATCTCAAGAGTCTCGAGCAGTTGGATTTATCAATGAACAGTTTGACAGGTAGTATTCCTAGTAGCTTGTTCTTGCTCAGGAACTTGACGTTTTTGTACTTGTACCATAATCGATTATCAGGTGTGGTACCTAGTTCGGTGCAGGCTCTGAATTTGACTGAAATAGATTTGGCTATGAACAATTTGACGGGTTCCATACCCCAAGAATTTGGAAAGTTGCAGAAATTGACGAGGCTACACTTGTATTCGAATCAATTGAATGGTGAGATTCCAAGCAGCCTAGGCCTAATTCCAAGTCTCAGAAACTTCAGGGTTTTCAGCAATAAGTTGAATGGAACATTGCCTTCAGAATTAGGCCTTTATTCGAAGCTTGTAGCATTTGAAGTTGCTGACAATCAACTCGTTGGTGGGTTGCCAGAACATTTGTGTGCAGGTGGTGCTTTGCTGGGTGTCATTGCTTTTTCTAACAATCTTAGTGGAGACTTGCCTCCATGGCTTGGAAATTGCACTTCTCTTACCACCATTCAGCTTTACGATAACAAATTTTCAGGGGAGGTTCCTTTGGGTTTGTGGAGTTTGAGGAAACTATCAACCTTGATGATAAGCAACAACTCATTTTCTGGTCAGCTTCCAAGTAAATTGTCTTGGAATATGTCGAGACTTGAGATTGGAAACAACAATTTTTCTGGTCAGATATCTCTTGGAGTTTCTTCAGCCTTCAATCTAGTAGTTTTTGATGCAAGAAACAACATGCTTTCGGGTGAAATTCCAAGAGAATTGACGGGTCTTTCTCGGCTTACTACTCTCATACTTGATGGTAATCAACTTTCTGGTCCACTTCCATCGAAGATAATCTCATGGCAATCACTGAATACTATATCACTCTCAAAAAACAAACTTTCTGGCCAAATCCCCATAGCCATGGCTGATCTTCCTAACCTTATTTACTTGGATTTGTCTGAAAATGACATATCTGGTGAAATCCCACTTCAGCTTGCAAAATTGAGGCTTGTTTTTCTCAACTTGTCCTCCAACAAGCTTTCAGGGAACATCCCGGATGAGTTTAATAACCTTGCATATCAAAATAGCTTCTTGAACAATCCTGATCTGTGTGCTTACAATAAAAAGCTCAACCTTTCGAGCTGTTTGCCCGAAACCCCACCACACTCCAGCCATTCATCTTCCAAATTCCTAGCCCTGATTCTTGTTGTCATCATCATTGTGTTGCTGGGCACTGCCTCCTTGGCCTTCTATTCATTGAAAAAGCACTGGGGCAAAAAGCACTGCAGGGGAAAGCGTTCAACATGGAGGCTTACCTCATTCCAGAGGCTTGATCTCACAGAAATAAATCTCTTCTCAAGTTTGACAGACAATAACCTTATTGGAACTGGAGGATTTGGGAGTGTTTACCGGATTGCTTCAAATCGTCCGGGTGTGTATGTTGCAGTGAAAAAGATTTGGAATCGCAGAGATATGGATGACAAACTGGAGAAAGAATTTATGGCTGAGGTTGAAATCCTGGGCAACATTCGGCATTCCAATATAGTGAAGCTTTTGTGTTGTTATTCAAGTGAGAACTCCAAACTCCTTGTTTATGAATACATGGAAAACCAGAGCCTGGAGAAATGGCTTCATCGGAAGAAGAAAACATCAGCTACTGATTTGAGTTGGCCAACGAGGTTGAAGATTGCCATTGGGGCTGCACAAGGCCTGTATTACATGCACCATGAATGCTCACCACCAATCATCCACCGAGATGTCAAAGCTAGCAATATACTTCTAGACTCTGAGTTCAGGGCTTGTATAGCAGATTTTGGGCTCGCTAAGATGTTGGCAAAGCCTGGGGAGCTACACACAATGTCTGCTATAGCAGGGTCTTTCGGTTACATTCCACCAGAATATGCCTATTCAACCAAGATTAACGAGAAAGCTGATGTATATAGCTTTGGGGTTGTACTCCTAGAGCTTGTGACTGGGAGAGAGCCTAATAGTAGTGGAGGCGAGCATGCAAGCAGCCTAGTTGATTGGGCATGGCAGCATTATAGTGATGGGAAGTGCCTCACCGATGCATTCGATGAGGATATCAAAGAAACACGTCATGCAGAAGCAATGACTAATGTCTTCAAATTAGGCCTTATGTGCACAAGCTCGTTACCCTCGACCAGGCCTTCCGCGAAGGAAATTTTGCAAGTCCTACGCCAGTGTTGTTCTCCAGGTTCTGCACGTAAAAGAGTGGCAACTGAGTTTGATATCACTCCTCTTCTTGGAGACACGAGGTACATTTCTAGTTACAAGGATAGCAGGTCTGTAAGCGAACATGGAGAAAGCTGCTTGTTTAGTGTGTAA 3075 0.453 MSEMPLFMLKLPVHFLLLLSVTLPSQVISQTTITEQTILLALKRQLGDPPSLQSWKPSSSSSSPCDWPEIRCTGGAVTELLLPSKDITAQKLPATICDLKNLTKLDLSNNSIAGEFPAFLYNCSNLRFLDLSQNYFSGVIPADVDRLKTLTHLNLGGNSFSGDIPAAIGRLRELQTLHLYQNNFNGTFPKEIGNLSNLETLGMAYNDKFLPMVIPFEFGNLKSLRFMWISRCNLIGEVPESFGNLKSLEQLDLSMNSLTGSIPSSLFLLRNLTFLYLYHNRLSGVVPSSVQALNLTEIDLAMNNLTGSIPQEFGKLQKLTRLHLYSNQLNGEIPSSLGLIPSLRNFRVFSNKLNGTLPSELGLYSKLVAFEVADNQLVGGLPEHLCAGGALLGVIAFSNNLSGDLPPWLGNCTSLTTIQLYDNKFSGEVPLGLWSLRKLSTLMISNNSFSGQLPSKLSWNMSRLEIGNNNFSGQISLGVSSAFNLVVFDARNNMLSGEIPRELTGLSRLTTLILDGNQLSGPLPSKIISWQSLNTISLSKNKLSGQIPIAMADLPNLIYLDLSENDISGEIPLQLAKLRLVFLNLSSNKLSGNIPDEFNNLAYQNSFLNNPDLCAYNKKLNLSSCLPETPPHSSHSSSKFLALILVVIIIVLLGTASLAFYSLKKHWGKKHCRGKRSTWRLTSFQRLDLTEINLFSSLTDNNLIGTGGFGSVYRIASNRPGVYVAVKKIWNRRDMDDKLEKEFMAEVEILGNIRHSNIVKLLCCYSSENSKLLVYEYMENQSLEKWLHRKKKTSATDLSWPTRLKIAIGAAQGLYYMHHECSPPIIHRDVKASNILLDSEFRACIADFGLAKMLAKPGELHTMSAIAGSFGYIPPEYAYSTKINEKADVYSFGVVLLELVTGREPNSSGGEHASSLVDWAWQHYSDGKCLTDAFDEDIKETRHAEAMTNVFKLGLMCTSSLPSTRPSAKEILQVLRQCCSPGSARKRVATEFDITPLLGDTRYISSYKDSRSVSEHGESCLFSV. 1025
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00668 1024 ProSitePatterns Protein kinases ATP-binding region signature. 704 728 IPR017441 GO:0005524
Seca4g00668 1024 Gene3D Phosphorylase Kinase; domain 1 680 777 - -
Seca4g00668 1024 SMART LRR_typ_2 171 195 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 506 530 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 269 292 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 316 340 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 554 578 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 245 268 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 436 460 IPR003591 -
Seca4g00668 1024 SMART LRR_typ_2 99 123 IPR003591 -
Seca4g00668 1024 ProSiteProfiles Protein kinase domain profile. 698 998 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00668 1024 ProSiteProfiles Leucine-rich repeat profile. 247 269 IPR001611 GO:0005515
Seca4g00668 1024 Pfam Leucine rich repeat N-terminal domain 37 72 IPR013210 -
Seca4g00668 1024 SUPERFAMILY L domain-like 42 382 - -
Seca4g00668 1024 PANTHER RECEPTOR KINASE-LIKE PROTEIN XA21 213 970 - -
Seca4g00668 1024 Pfam Leucine rich repeat 532 590 IPR001611 GO:0005515
Seca4g00668 1024 Pfam Leucine rich repeat 239 282 IPR001611 GO:0005515
Seca4g00668 1024 Pfam Leucine rich repeat 101 159 IPR001611 GO:0005515
Seca4g00668 1024 CDD STKc_IRAK 704 975 - -
Seca4g00668 1024 FunFam Receptor-like protein kinase HSL1 678 777 - -
Seca4g00668 1024 FunFam Leucine-rich repeat receptor-like protein kinase TDR 313 626 - -
Seca4g00668 1024 Gene3D Ribonuclease Inhibitor 460 644 IPR032675 -
Seca4g00668 1024 Gene3D Ribonuclease Inhibitor 187 291 IPR032675 -
Seca4g00668 1024 Gene3D Ribonuclease Inhibitor 32 186 IPR032675 -
Seca4g00668 1024 SUPERFAMILY Protein kinase-like (PK-like) 693 975 IPR011009 -
Seca4g00668 1024 Gene3D Ribonuclease Inhibitor 386 459 IPR032675 -
Seca4g00668 1024 SMART serkin_6 698 975 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00668 1024 FunFam Receptor-like protein kinase HSL1 isoform A 32 186 - -
Seca4g00668 1024 Pfam Protein kinase domain 700 973 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00668 1024 Gene3D Transferase(Phosphotransferase) domain 1 778 992 - -
Seca4g00668 1024 PRINTS Leucine-rich repeat signature 245 258 - -
Seca4g00668 1024 PRINTS Leucine-rich repeat signature 102 115 - -
Seca4g00668 1024 Gene3D Ribonuclease Inhibitor 292 385 IPR032675 -
Seca4g00668 1024 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 189 286 - -
Seca4g00668 1024 FunFam Kinase family with leucine-rich repeat domain-containing protein 778 991 - -
Seca4g00668 1024 ProSitePatterns Serine/Threonine protein kinases active-site signature. 825 837 IPR008271 GO:0004672|GO:0006468
Seca4g00668 1024 SUPERFAMILY RNI-like 292 602 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00668 Seca-Chr4 11124121 11127572 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00668 21 998 Receptor kinase-like Gene Family AT5G25930 55.285 0.0 1052
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g00668 Pkinase 8.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00668 - K00924 adu:107461025 1443.71