Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00665 ATGGCCATCGCAACAGAGACTCAGCCTCAACCTCAACAACACACGGCTTATTCGGAGGTTTCAGGTTCAGCTGCGGAGCAAAGAAGGTGGACGCTTAATGATTTTGATATCGGAAAACCTCTTGGAAGGGGAAAATTCGGTCATGTCTATTTGGCCAGAGAAAAGAGAAGTAATCACATCGTTGCTCTGAAAGTACTCTTTAAGAGCCAATTGCAACAATCCCAAGTTGAGCATCAGCTTAGGCGAGAAGTTGAAATACAAAGTCATCTCCGACATCCCCATATCTTACGCCTTTATGGGTACTTTTATGATCAGAAACGAGTTTATTTGATTTTAGAGTATGCACCCAAAGGTGAACTCTACAAGGAATTACAGAAATGCAAATATTTCAGTGAAAGACGTGCAGCTACTTATGTTGCATCATTGGCCCGAGCTCTTATATATTGCCATGGAAAGCATGTAATACATAGGGACATTAAACCGGAGAACCTTCTTATTGGTGCCCAGGGTGAACTGAAGATAGCTGACTTTGGGTGGTCGGTGCACACATTCAATCGCAGGCGGACCATGTGTGGTACACTGGATTACCTTCCTCCTGAGATGGTGGAGAGTGTAGAACATGATGCGAGTGTGGATATATGGAGCCTTGGTGTCCTTTGCTATGAATTTCTTTATGGAGTCCCTCCTTTTGAGGCTAAAGAACATTCTGATACTTACAGGAGGTAA 726 0.4353 MAIATETQPQPQQHTAYSEVSGSAAEQRRWTLNDFDIGKPLGRGKFGHVYLAREKRSNHIVALKVLFKSQLQQSQVEHQLRREVEIQSHLRHPHILRLYGYFYDQKRVYLILEYAPKGELYKELQKCKYFSERRAATYVASLARALIYCHGKHVIHRDIKPENLLIGAQGELKIADFGWSVHTFNRRRTMCGTLDYLPPEMVESVEHDASVDIWSLGVLCYEFLYGVPPFEAKEHSDTYRR. 242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00665 241 ProSitePatterns Protein kinases ATP-binding region signature. 41 64 IPR017441 GO:0005524
Seca4g00665 241 Gene3D Transferase(Phosphotransferase) domain 1 119 241 - -
Seca4g00665 241 FunFam Aurora kinase A 27 118 - -
Seca4g00665 241 PANTHER SERINE/THREONINE-PROTEIN KINASE IAL-RELATED 9 241 IPR030616 GO:0004672
Seca4g00665 241 SMART serkin_6 35 238 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00665 241 SUPERFAMILY Protein kinase-like (PK-like) 20 240 IPR011009 -
Seca4g00665 241 CDD STKc_Aurora 34 241 - -
Seca4g00665 241 PIRSF ILK 4 240 - -
Seca4g00665 241 ProSitePatterns Serine/Threonine protein kinases active-site signature. 154 166 IPR008271 GO:0004672|GO:0006468
Seca4g00665 241 ProSiteProfiles Protein kinase domain profile. 35 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00665 241 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g00665 241 FunFam Serine/threonine-protein kinase ark1 27 241 - -
Seca4g00665 241 Pfam Protein kinase domain 37 239 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00665 241 Gene3D Phosphorylase Kinase; domain 1 22 118 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00665 Seca-Chr4 11094855 11097717 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00665 35 241 CBL-interacting serine-threonine protein kinases AT5G35410 35.545 4.00e-45 153
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK Aur Seca4g00665 Pkinase 1.1e-63 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00665 K08850 - gmx:100803678 483.796