Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00631 ATGCTCGCCGAATTCTCTTCCCCGCGACTCTTCTCTCTTCTTCTCCTCCTTCTTCTCCTCTTCTCATTCATCACACCACTCACCAGTGTCAAACTTGACGAGCGTCAAATCCTACTGAACCTAAAATCCTCCCTTCACAAATCCAATTCCAATCTCTTTGACTCATGGAATGCCACCAATTCCATCTGCAATTTCCACGGTATCACTTGCAATTCCCTCAATTCCGTCACCGAAATCAACCTTTCCAATCAAAAACTCTCTGGACTCCTCCCTCTGGACTCCCTCTGCAACCTCCAATCACTCGAGAAGCTAGCCTTGGGTTTCAACAACTTATACGGCAGCGTTTCAGAGGACCTTAGAAACTGCGTCAAGCTACGGTACTTGGACTTAGGCAACAACGTTTTCTCTGGACCTTTCCCTGACATATCTCCCCTCAAAGAATTGCAGTATCTGTTTCTGAACAAAAGTGGATTCTCTGGAACTTTTCCATGGCAGTCCCTGTTGAACATGACGGGTTTATTGCAGTTAAGCGTTGGAGATAACCCTTTCGATCTAACGCCTTTTCCTAAAGAGGTGTTGAGTCTCAAGAGGCTGAATTGGCTCTACCTATCCAATTGCACACTTGGAGGGAAATTACCGGTTGGGATCGGTAACCTCACGGAGCTTACCGAATTGGAATTCTCCGATAATTTCATCACCGGTGATTTTCCCGCGGAGATTGTGAACCTTCGTAAACTGTGGCAGCTTGAATTCTACAACAACTCCTTCACAGGGAAGATTCCAACGGGATTGGGAAATCTCACTGGCCTTAACTATTTCGATGGTTCCATGAACAATCTCGAAGGGGATCTCTCTGAATTGAAGACTCTGACGAATCTTATTTCTCTTCAACTTTTCGAGAACAACTTGTCTGGTGAGATTCCACCTGAGTTAGGCGAGTTCAAACACCTCCGCAGTTTGTCCCTGTACAGGAACAAATTGACCGGTCCAATTCCTCAGAAGATTGGTTCGTGGTCCGATTTTGATTTCATCGACGTGTCGGAGAATTTCTTGACGGGTCCAATTCCGCCGGATATGTGCAGCAAGGGAAAGATGACGGCGTTGCTGGTGCTTCAGAACAATCTCACCGGCGAGATTCCGGCGAGCTATGGAAACTGTTTGACCATGAACCGGTTCAGGGTAAGCAGAAACTCGCTCTCGGGAACTATCCCTCCAGGGATATGGGGATTTCCCAACGCTGAAATAATCGATATTGAAATGAATCAGTTAGAAGGTTCGGTTACTTCAGATATCCAGAACGCTAAAACACTTGCTAGCATATTCGCGAAGAGGAACCGGTTAACCGGTGAATTACCGGAAGAAATCTCCAAAGCGACGTCGTTGGTGACTATCGACCTGAGCGAGAATCAAATCTCGGGGAACATTCCAGAAGGAATTGGAGAGCTTAAACAACTCGGTAACCTTCATTTACAGAACAATAAATTAACAGGTTCAATACCAGAGTCGTTAGGTTCATGTAACAAACTCAACGACCTTGATCTATCAAGAAACTCCCTCTCTAAAAAAATCCCTTCCTCTTTAGGTTCCTTGCCTGCTTTGAATTCGCTAAACCTGTCACAAAACGAACTCTCCGGTGAAATCCCGGTGAGTTTAGCATCCCTCAGGTTGAGCCTCTTTGATTTGTCACAGAATCAGTTAAAAGGTCCAATTCCACAAGCTTTGACCATTCAAGCTTACAACGGAAGCCTCACCGGAAACCCCGGTCTCTGCACCTTTGATGCCATAAGCTCCTTCCCGCGTTGCTCTCCGAACTCTGGCATGTCAAAAGACATGCGTGCGCTTGTGATTTGCTTCTCAATTGCTTTAATCGTGCTTCTCTCGTGTTTGGGGCTCTACTTGCGGTTGAGGAAGAAGAGGGAAGACGAGGAAGAGGAGAAGAAATACGGAAGAGGAGGTCGTTCCCTTAAGGAAGAATCTTGGGATGTTAAATCGTTCCACGTGCTGAGTTTCACTGAGGATGAGATTCTTGATTCCATTAAACAGGAGAATCTAATAGGGAAAGGTGGTTCAGGGAATGTGTATAGAGTCACGCTTTCCAATGGGAAAGAACTTGCTGTGAAGCATATTTGGAACACTGATTTCCCTGCACGGAAAAGGTCATGGAGCAGCACTCCTATGCTTGGAAAGCGCGGTGGAAAATCGAAGGAATTCGATGCGGAGGTGCAGACGTTGAGCTCCATAAGGCATGTGAATGTGGTGAAGCTTTATTGTAGTATCACGAGTGAGGATTCTAGCTTGCTAGTGTATGAGTATTTGCCGAATGGGAGCTTATGGGATCGGCTTCACATGAGTGGGAAGATGGAGCTTGATTGGGAAACGAGGTATGAGATTGCGGTTGGAGCAGCGAAAGGGTTGGAGTATCTGCATCATGGTTGTGAGAGGCCTGTGATTCACAGGGATGTGAAATCAAGTAACATTTTGTTGGATGAGTTTCTGAAGCCTAGAATTGCTGATTTTGGACTAGCTAAGATTGTTCAAGCCAACGTTGGTATTGGCAAGGATTCTACTCATGTCATTGCCGGGACCCACGGATACATTGCTCCTGAATATGGATACACTTACAGAGTGAATGAGAAAAGTGATGTTTATAGCTTTGGAGTGGTGTTAATGGAACTGGTAACTGGGAAAAGGCCAATTGAACCAGAATTTGGAGAAAACAAGGACATAGTTAGCTGGGTTCATAGCAAGACACAGAGCAAAGAGAGGTTCAGGAGTGTGGTGGACTCAAGAATTCCAGAGATGTATAAAGGGGAAGCTTGCAAGGTGTTAAGAACTGCAGTGCTCTGTACAGCAACTCTTCCAGCTTTAAGACCCACCATGAGGGCTGTTGTTCAAAAGCTTGAGGATGCTGCGCCTTGTAAATTGGTTGGAATTATCATTAACAAAGATGACGGTGGAAAGAAAATAGGAGTCAACGACAAGTAA 2985 0.4549 MLAEFSSPRLFSLLLLLLLLFSFITPLTSVKLDERQILLNLKSSLHKSNSNLFDSWNATNSICNFHGITCNSLNSVTEINLSNQKLSGLLPLDSLCNLQSLEKLALGFNNLYGSVSEDLRNCVKLRYLDLGNNVFSGPFPDISPLKELQYLFLNKSGFSGTFPWQSLLNMTGLLQLSVGDNPFDLTPFPKEVLSLKRLNWLYLSNCTLGGKLPVGIGNLTELTELEFSDNFITGDFPAEIVNLRKLWQLEFYNNSFTGKIPTGLGNLTGLNYFDGSMNNLEGDLSELKTLTNLISLQLFENNLSGEIPPELGEFKHLRSLSLYRNKLTGPIPQKIGSWSDFDFIDVSENFLTGPIPPDMCSKGKMTALLVLQNNLTGEIPASYGNCLTMNRFRVSRNSLSGTIPPGIWGFPNAEIIDIEMNQLEGSVTSDIQNAKTLASIFAKRNRLTGELPEEISKATSLVTIDLSENQISGNIPEGIGELKQLGNLHLQNNKLTGSIPESLGSCNKLNDLDLSRNSLSKKIPSSLGSLPALNSLNLSQNELSGEIPVSLASLRLSLFDLSQNQLKGPIPQALTIQAYNGSLTGNPGLCTFDAISSFPRCSPNSGMSKDMRALVICFSIALIVLLSCLGLYLRLRKKREDEEEEKKYGRGGRSLKEESWDVKSFHVLSFTEDEILDSIKQENLIGKGGSGNVYRVTLSNGKELAVKHIWNTDFPARKRSWSSTPMLGKRGGKSKEFDAEVQTLSSIRHVNVVKLYCSITSEDSSLLVYEYLPNGSLWDRLHMSGKMELDWETRYEIAVGAAKGLEYLHHGCERPVIHRDVKSSNILLDEFLKPRIADFGLAKIVQANVGIGKDSTHVIAGTHGYIAPEYGYTYRVNEKSDVYSFGVVLMELVTGKRPIEPEFGENKDIVSWVHSKTQSKERFRSVVDSRIPEMYKGEACKVLRTAVLCTATLPALRPTMRAVVQKLEDAAPCKLVGIIINKDDGGKKIGVNDK. 995
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00631 994 Gene3D Phosphorylase Kinase; domain 1 662 771 - -
Seca4g00631 994 Gene3D Ribonuclease Inhibitor 359 607 IPR032675 -
Seca4g00631 994 ProSiteProfiles Protein kinase domain profile. 679 971 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00631 994 FunFam Receptor-like protein kinase HAIKU2 662 771 - -
Seca4g00631 994 Gene3D Ribonuclease Inhibitor 288 358 IPR032675 -
Seca4g00631 994 FunFam Leucine-rich receptor-like protein kinase family protein 190 286 - -
Seca4g00631 994 Pfam Leucine rich repeat 484 543 IPR001611 GO:0005515
Seca4g00631 994 SMART serkin_6 679 974 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00631 994 FunFam Probable inactive receptor kinase RLK902 31 189 - -
Seca4g00631 994 Pfam Protein kinase domain 681 965 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00631 994 SUPERFAMILY L domain-like 278 599 - -
Seca4g00631 994 Gene3D Transferase(Phosphotransferase) domain 1 772 975 - -
Seca4g00631 994 ProSitePatterns Serine/Threonine protein kinases active-site signature. 816 828 IPR008271 GO:0004672|GO:0006468
Seca4g00631 994 SUPERFAMILY L domain-like 56 288 - -
Seca4g00631 994 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 22 967 - -
Seca4g00631 994 SMART LRR_typ_2 195 219 IPR003591 -
Seca4g00631 994 SMART LRR_typ_2 98 122 IPR003591 -
Seca4g00631 994 SMART LRR_typ_2 530 554 IPR003591 -
Seca4g00631 994 SMART LRR_typ_2 482 506 IPR003591 -
Seca4g00631 994 SMART LRR_typ_2 290 314 IPR003591 -
Seca4g00631 994 Gene3D Ribonuclease Inhibitor 32 187 IPR032675 -
Seca4g00631 994 SUPERFAMILY Protein kinase-like (PK-like) 670 967 IPR011009 -
Seca4g00631 994 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca4g00631 994 ProSitePatterns Protein kinases ATP-binding region signature. 685 707 IPR017441 GO:0005524
Seca4g00631 994 FunFam LRR receptor-like serine/threonine-protein kinase RCH1 772 979 - -
Seca4g00631 994 FunFam Leucine-rich repeat receptor-like protein kinase TDR 287 603 - -
Seca4g00631 994 Gene3D Ribonuclease Inhibitor 188 287 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00631 Seca-Chr4 10427346 10431018 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00631 18 983 Receptor kinase-like Gene Family AT1G09970 61.649 0.0 1176
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Seca4g00631 Pkinase 6.1e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00631 - - gmx:100809356 1538.86