Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00618 ATGGAGCTCTATGACCATGATTTCTTGGAGGAATTAATGGCTCTAAGAAGAGAAACATGGGACACCAATCCAATTACAGAAGAAAACCAATTCTTCTCTAATGGTTGGAGTTTTGACTCTTTTGATCAAAACTCTCTAGGCTATATCCCAAACTCTTCTTGTGGTCAACAAGTTCCTCAAAGTTATTACAATGACTGCAACAACTTCAATGAAATCTATGGCTCCTTGCTTCTTGATGACTCCTCTGCCTCTACCTCAGCACCACAGATTATGGATTCATACTATAATAATAGTAACTCCCTTGACCTTGATACTCCACTTAATACACCTCCATTTCTTGCTCAAGAAGACTTGCCATTGTCCATGATGGAAGAAGAGGATCCATGTTTGCTTGGGGAAGAGCTTCAGAATTTGGAGCTGCAAACCACTTGCAAAATGGAGCCAATCCAATCCCCTGAAACAATGCCAGTTTTCAACATGGGCACTGGTCTTGAAAGAAAGAATCGATCAAAGAAGCTTCAGGGGCAACCCTCCAAGAATCTAATGGCAGAGAGAAGAAGAAGAAAGAGATTAAATGACCGTCTCTCAATGCTAAGAGCAATTGTCCCTAAGATAAGCAAGATGGACAGAACATCTATACTTGGAGACACTATTGATTACATGAAAGAGCTTCTAGAGAAGATCAACAATCTTCAACAGGAAATAGAAGTGGATTCAGATTCAAACATTGCTGGCATTTTCAAAGATGTAAAGCCAAATGAAATCTTAGTGAGAAATTCACCAAAGTTTGAGGTGGAGAGGAATGTGGACACCAGGATTGAAATTTGCTGTGCAGGGAAGCCAGGGTTGTTGGTATCCACAGTGAACACCTTGGAAGCATTAGGCCTTGAGATTCAACAATGTGTAATTAGCTCTTTCAATGATTTCACAATGCAGGCTTCTTGCTCAGAGGAATTAGAGAGAAGGACAATGCTGAGTTCTGAAGATATTAAGCAAGCATTATTTAGAAGTGCAGGGTATGGAGGGAGATGTTTATGA 1038 0.4027 MELYDHDFLEELMALRRETWDTNPITEENQFFSNGWSFDSFDQNSLGYIPNSSCGQQVPQSYYNDCNNFNEIYGSLLLDDSSASTSAPQIMDSYYNNSNSLDLDTPLNTPPFLAQEDLPLSMMEEEDPCLLGEELQNLELQTTCKMEPIQSPETMPVFNMGTGLERKNRSKKLQGQPSKNLMAERRRRKRLNDRLSMLRAIVPKISKMDRTSILGDTIDYMKELLEKINNLQQEIEVDSDSNIAGIFKDVKPNEILVRNSPKFEVERNVDTRIEICCAGKPGLLVSTVNTLEALGLEIQQCVISSFNDFTMQASCSEELERRTMLSSEDIKQALFRSAGYGGRCL. 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00618 345 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Seca4g00618 345 Pfam Helix-loop-helix DNA-binding domain 181 224 IPR011598 GO:0046983
Seca4g00618 345 CDD ACT_UUR-ACR-like 271 312 - -
Seca4g00618 345 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 179 237 IPR036638 GO:0046983
Seca4g00618 345 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 71 340 - -
Seca4g00618 345 SMART finulus 181 230 IPR011598 GO:0046983
Seca4g00618 345 Coils Coil 214 241 - -
Seca4g00618 345 Gene3D - 165 240 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00618 Seca-Chr4 10099031 10101032 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00618 166 345 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 68.132 4.40e-73 227
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Seca4g00618 HLH 1.5e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00618 - - gmx:100812578 541.962