Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00605 ATGCCTTTGTTTAAAAAGAAAAACAAGGGTTCACCCATGTCCTCCGCCCCAGGGGTACAGTTGCACATCCAACAACACCATGTGGTGATGGATAATGGCATAGTCCAAGTCACGTTATCAAATCCAGATGGAATTGTCACTGGGATACGATATAATGGTGTTGACAATTTGCTTGAAGTTCTCAATAAGGAGACCAATAGAGGGTATTGGGACCTTGTTTGGAGCTCACCAACAAGTACAGGAACCACTGGTAGATTTGATGTGATAAAGGGAAGCAGTTTCAACGTTGTAGTCGAAAATGAGGACCAAGTTGAGTTATCCTTCGCCAGGACGTGGGATGCCTCCCTAGATGGCAAGTTGGTTCCTTTGAATATTGATAAAAGGTTCATAATGCTTCGTGGTTCATCTGGCTTCTACTCGTATGCAATTTATGAGCACTTGGAGGACTGGCCTGCTTTCAATCTTGACGAAACAAGAATTGCTTTCAAGCTTAGAAAAGACAAGTTCCATTATATGGCGATGGCAGATAATAGACAAAGAAATATGCCTCTTCCAGATGACCGATTACCACCAAGAGGCCAACCCCTTGCCTACCCAGAGGCAGTTCTGCTTGTAAACCCTGTCGAACCAGAGTTTAAAGGAGAGGTGGATGACAAGTACCAATATTCATGTGACAACAAAGATAGCCAAGTTCATGGATGGATTTGCATGGATCCTGCTGTGGGATTCTGGCTAATTACGCCTACCAATGAGTTTCGATCTGGTGGACCCCTCAAACAGAACTTAACTTCCCACGTTGGACCTACCACGCTTGCTGTGTTTCTCAGTGCTCATTATAGTGGAGAGGATTTGGTGCCTAAGTTCAAAGCTGGTGAGGCATGGAAGAAAGTTTTTGGTCCAATTTTCATCTATTTAAATTCTCCTAATGATGGAGGTGACCCCCTTACACTATGGGATGACGCTAAACTACAGATGTTAGTGGAAGTTCAAAGCTGGCCTTATAGTTTCCCTGAATCAGAGGATTACCCAAAGTGGGACGAACGTGGTAATGTTAGTGGCAGGCTATTGATTAGAGAAAGGTATATAGACGATGATGACTATATATCAGCAAAAGGTGCCTATGTTGGCTTGGCTCCACCAGGGGATTTGGGATCTTGGCAAAGAGAATGCAAGAATTATCAGTTTTGGGCTCAAGCAGATGATGATGGCTATTTCTCCATCAGCAATATTCGTGCTGGAGACTATAATGTTTACGCATGGGTACCTGGTTTTATTGGTGACTATAAATATGATGTAGTTATGAACATAACAGAAGGTTGTGACATAGACATTGGTGATCTTGTATATGAACCTCCAAGAGATGGTCCAACATTGTGGGAAATAGGAACCCCTGATCGCTCAGCTGCTGAGTTCTATGTTCCTGATCCAAATCCTAAATATATCAACAAACTCTATGTTAATCATCCTGACAAGTTTAGGCAATATGGGTTATGGGAGAGATATTCAGAACTATACCCTGACAAAGACTTGATTTACACTGTTGGTGTTAGTGACTACACTAAAGATTGGTTCTTTGCTCAAGTTACCAGGAAGAAGGATGATAATACATATCAAGGAACCACATGGCAAATCAATTTTCAGCTTGATAATGTAAACAAAAGTAGTAGCTACAAACTACGAGTAGCTGTAGCATCAGCAACATTCTCTGAACTTCAGGTTCGAGTTAATGATCCAAAGGCAAATCGCCCTCTATTTTCAAGTGGGTTGATAGGAAGGGATAACTCAATTGCTAGGCATGGAATTCATGGGCTTTATTGGCTTTTTAGTGTGGACATACCAGGAACTAAACTTGTTGAAGGAGAGAATACCATCTTTTTGACACAAGCAAGAGGAAATAGCCCATTTCAGGCCATAATCTATTTCAAGGGACTAATTTATAGTGTGTCATCCTCAGGGGTGCGTTTGGATATTCAAGAAAAACATGTGGTAATGGATAATGGCATAGTCCAGGTTACCCTATCAAATCCTGAAGGAATTGTCACAGGAATTCAATATAATGGGGTTGACAATTTGCTGGAAGTTCTTAACCAGGAATCTAACAGAGGGTATTGGGATATTGTATGGGACCAGGGTGGGAAAAATAGAACAAAAAAAGGAGCAAAGGACAGGATGGAAGCAACAAACTTGACAGTAATAATGGAAAATGAAGAACAGGTAGAGCTATCTTTCACCAGAATGTGGAATCTCTCTCTTGAGGGAAAGCTTGCACCACTCAATATTGATAAAAGGTTTATAATGCTTAGGGGTTCATGTGGGTTCTACACATATGCCATTTACGAGCATTTGAAGGAATGGCCTGCCTTTGATCTTGACAATACTAGGATTGCATTCAAGCTTAGGAAAGACAAGTTCCATTACATGGTTGTAGCAGACGAGAGGCAAAGATTTATGCCGTTACCTGATGACCGATCACAAGAAAGAGGTGAAGTTTTGGCCTATCCAGAGGCTGTTCGCCTTGTCAATCCTGTGGAACCAGAGTTCAAAGGAGAGGTGGATGACAAATATCAGTACTCATGTGAGAGTCGAAACAACCGTGTTCATGGCTGGATATGCATCGATCCATTGGAATCCATTGGATTCTGGCTAATTACACCCAGCTTTGAGTTCCGATCTGCTGGCCCCCTCAAGCAATACCTAACTTCCCACGTGGGCCCCACCACCCTCTCTGTATTTCATAGCACACATTATTCCGGGACAGATCTCATAATGAAATTTGGACCTAATGAGGCGTGGAAGAAAGTCTTTGGGCCCGTTTTCATATACCTTAATTCCCTCTCTAATGGGTTTAGCCCCATCTTGCTCTGGGAGGATGCCAAACAACAGATGGTCAATGAAATTGAAAGCTGGCCTTATACATTTCCAGCTTCAGAGGATTTCCTCTCATCTGACCAACGTGGTAAAGTTGAAGGTAGATTGCTTGTCCGAGACAGGTACATCAGTGATGCATTCATCCCAGTGAGCGGTGGTTATGTGGGATTAGCATCCCCAGGAGATGTTGGATCTTGGCAAAGAGAATCCAAGGGTTATCAATTTTGGACCATTACTGATGATAAAGGCTATTTCTCAATTATTGACATTCTTCCTGGGGACTATAATCTGTATTCCTGGGTCACTGGATTTATTGGTGATTATCAATATGATAGCGTCATTAACGTAACCTCAGGTTGTGAAGTTAATGTGGGTGAGCTTGTTTATGAGCCACCAAGAGATGGCCCTACATTGTGGGAAATAGGCATCCCCGATCGATCAGCTGCTGAGTTCTATGTTCCTGAACCAAATCCCATGTACATAAATAGACTTTATGTCAACCATTCAGACAGGTATAGGCAATATGGCTTGTGGGAGAGATATGCTGATTTATATCCAAATAAAGACCTAGTTTACACAGTTGGCATTAGTGACTACAGAAAAGATTGGTTTTTTGCTCAGGTTAACAGGAAGAAAGACAATAACACTTACCAAGGGACCACATGGCAAATTAATTTCAATCTTGATTATGTGAATACCAATGGAACCTACAAATTGAGACTGGCTCTGGCATCTGTACATGATGCTAACCTACAGATTCGGTTTAACAATTCAGAAGCAGATCCACCTTTATTTTCAAGTGGAATAATTGGAAAGGAGAATACAATAGCCAGACATGGAATTCACGGGCTCTACTGGCTATACAGCATTGATGTACAAGGCACTCTTCTTGTGCAGGGGAACAATACCATCTTTCTAACTCAAGCAAGGAACACAAGTCCTTTTCAAGGAATTTTGTATGATTATATACGTTTAGAAGGACCCCTTTTTATAAATCATAAAGATCAAAACTAG 3882 0.4163 MPLFKKKNKGSPMSSAPGVQLHIQQHHVVMDNGIVQVTLSNPDGIVTGIRYNGVDNLLEVLNKETNRGYWDLVWSSPTSTGTTGRFDVIKGSSFNVVVENEDQVELSFARTWDASLDGKLVPLNIDKRFIMLRGSSGFYSYAIYEHLEDWPAFNLDETRIAFKLRKDKFHYMAMADNRQRNMPLPDDRLPPRGQPLAYPEAVLLVNPVEPEFKGEVDDKYQYSCDNKDSQVHGWICMDPAVGFWLITPTNEFRSGGPLKQNLTSHVGPTTLAVFLSAHYSGEDLVPKFKAGEAWKKVFGPIFIYLNSPNDGGDPLTLWDDAKLQMLVEVQSWPYSFPESEDYPKWDERGNVSGRLLIRERYIDDDDYISAKGAYVGLAPPGDLGSWQRECKNYQFWAQADDDGYFSISNIRAGDYNVYAWVPGFIGDYKYDVVMNITEGCDIDIGDLVYEPPRDGPTLWEIGTPDRSAAEFYVPDPNPKYINKLYVNHPDKFRQYGLWERYSELYPDKDLIYTVGVSDYTKDWFFAQVTRKKDDNTYQGTTWQINFQLDNVNKSSSYKLRVAVASATFSELQVRVNDPKANRPLFSSGLIGRDNSIARHGIHGLYWLFSVDIPGTKLVEGENTIFLTQARGNSPFQAIIYFKGLIYSVSSSGVRLDIQEKHVVMDNGIVQVTLSNPEGIVTGIQYNGVDNLLEVLNQESNRGYWDIVWDQGGKNRTKKGAKDRMEATNLTVIMENEEQVELSFTRMWNLSLEGKLAPLNIDKRFIMLRGSCGFYTYAIYEHLKEWPAFDLDNTRIAFKLRKDKFHYMVVADERQRFMPLPDDRSQERGEVLAYPEAVRLVNPVEPEFKGEVDDKYQYSCESRNNRVHGWICIDPLESIGFWLITPSFEFRSAGPLKQYLTSHVGPTTLSVFHSTHYSGTDLIMKFGPNEAWKKVFGPVFIYLNSLSNGFSPILLWEDAKQQMVNEIESWPYTFPASEDFLSSDQRGKVEGRLLVRDRYISDAFIPVSGGYVGLASPGDVGSWQRESKGYQFWTITDDKGYFSIIDILPGDYNLYSWVTGFIGDYQYDSVINVTSGCEVNVGELVYEPPRDGPTLWEIGIPDRSAAEFYVPEPNPMYINRLYVNHSDRYRQYGLWERYADLYPNKDLVYTVGISDYRKDWFFAQVNRKKDNNTYQGTTWQINFNLDYVNTNGTYKLRLALASVHDANLQIRFNNSEADPPLFSSGIIGKENTIARHGIHGLYWLYSIDVQGTLLVQGNNTIFLTQARNTSPFQGILYDYIRLEGPLFINHKDQN. 1294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00605 1293 Pfam Polysaccharide lyase family 4, domain II 371 443 IPR029413 -
Seca4g00605 1293 Pfam Polysaccharide lyase family 4, domain II 1007 1079 IPR029413 -
Seca4g00605 1293 CDD RGL4_M 984 1083 IPR029413 -
Seca4g00605 1293 CDD RGL4_C 1095 1282 - -
Seca4g00605 1293 Pfam Polysaccharide lyase family 4, domain III 457 640 IPR029411 -
Seca4g00605 1293 Pfam Polysaccharide lyase family 4, domain III 1093 1281 IPR029411 -
Seca4g00605 1293 CDD RGL4_C 459 640 - -
Seca4g00605 1293 FunFam Rhamnogalacturonate lyase B 981 1080 - -
Seca4g00605 1293 CDD RGL4_N 661 944 - -
Seca4g00605 1293 SUPERFAMILY Starch-binding domain-like 1027 1080 IPR013784 GO:0030246
Seca4g00605 1293 SUPERFAMILY Galactose-binding domain-like 454 640 IPR008979 -
Seca4g00605 1293 SUPERFAMILY Starch-binding domain-like 391 438 IPR013784 GO:0030246
Seca4g00605 1293 FunFam Rhamnogalacturonate lyase B 344 444 - -
Seca4g00605 1293 Gene3D - 18 319 IPR014718 GO:0030246
Seca4g00605 1293 PANTHER RHAMNOGALACTURONATE LYASE FAMILY PROTEIN 23 640 - -
Seca4g00605 1293 Pfam Rhamnogalacturonate lyase family 652 851 IPR010325 -
Seca4g00605 1293 Pfam Rhamnogalacturonate lyase family 15 216 IPR010325 -
Seca4g00605 1293 Gene3D - 455 639 - -
Seca4g00605 1293 Gene3D - 1091 1282 - -
Seca4g00605 1293 CDD RGL4_N 27 317 - -
Seca4g00605 1293 SUPERFAMILY Galactose mutarotase-like 30 309 IPR011013 GO:0003824|GO:0005975|GO:0030246
Seca4g00605 1293 CDD RGL4_M 347 447 IPR029413 -
Seca4g00605 1293 SUPERFAMILY Galactose-binding domain-like 1090 1282 IPR008979 -
Seca4g00605 1293 Gene3D - 346 439 - -
Seca4g00605 1293 Gene3D - 981 1081 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00605 Seca-Chr4 9934944 9962775 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00605 19 640 Polysaccharide Lyase AT1G09890 72.917 0.0 956
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00605 K18195 - gmx:100814721 1186.4