Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00588 ATGGATCATATTGTGCTACTCATTCTTCTCACACAAAGCTTTCTTCTATGTTCAAATGTCACCGCACAGCAGAATTACTCTGGAAATTCAATACTAGACTGCAAGAACAACGACACAATGGGTCCTTCTCCAGCTTTCCTTTACACCTGCAACGGCCTCAACAAATCCTGCTTGTCCTTCCTCATCTTCAAATCCCAACCTCCTTACACCACCACCATCACAATCTCCAACCTCACATCATCAAACCCAGAAGAACTTGCCAGAATCAATAACGCCACTATATTCACGGTGTTCCCCACTGGCAAAGAGGTAATAGTCCCGGTGAACTGTTCCTGTCTAACTAGGGATTACTACCAAGCTGAAAGCAAATACGTATTGCCCCCAAAACCAACATACTTAATAGTAGCAAATAACACGTATCAGGGACTTTCCACATGTGATTCTCTAATTCGTGCCAATCCGTATGGGGTGCTTGATTTGTTACCTGGCATGGAATTGCACGTGCCACTTAGATGTGCTTGTCCAACCAAGAATCAAATTACCATGAATAGCACCAAGTATTTATTGACTTACCCTGTGAATTGGGGTGATAATATTACTAATATTGCCAAAAGATTCAATGTTACTGCAGCAAGTCTAGTTGATGCCAATGGTTTTTCCTCTGAAAATCAAATTCTTTATCCATTCACAACTGTTCTGATTCCGTTAACAAGTGAACCTAAGAGTTCAATAACCATTATTCATAAGGATCAACCAGCCCCTTCACCTCCTAATGTTTCTATCTTTAGGAGTAATAATAAGACAAAGAGAAAACTCCTAGTCTCTTTAGCCACCACAGGTAGCTTCATTCTCGTTCTCTGTGTCGTTTTATCTGCCGTGTTTCTCTTCAGAAAGGGAAGAGCAAGGTTCTTTAAGAGAGGTACAAAAGGTAAAACAGTACCAGTGTCTTCAGAAGATATCCGTGAGGAGATAGCATGTATTGAGCATCTCTCTAAAGTGTACACATTAAAGGAAATAGAGGATGCTACTGAGAATTTCAGCTTAAAGAATAGGATTAAAGGATCTGTTTATCGTGGGGTGTTGGGTAATGACAGAGACATCTTGGCTATCAAGAAAATGAATGCAGATGCGTCCAAGGAAGTGAATTTGCTGGGAAGAATCAATCATTTCAACCTCATAAAGCTGAAAGGTTATTGTAAAAACAATGGCTTCTTCTGCCTTGTTTTTGAATACATGGCAAATGGTTCTTTAAGAGAATGGCTTGGTAAAAGTGGGTCCACAGGGCACAATAGTTGGGCAAAGAGGATCCAGATTGCTCTGGATATTGCCAATGGACTTGAGTATCTTCACAACTTCACAGAGCCTTGCTATGTACACAAGGGTATTAGCACAGACAACATTCTACTGAACAATGATCTAAGGGCCAAGATAGCAAATTTTACTCTTGCTGAAGAGTCAAAGAGTGAAGTAACCACAGGTTCTCCTTCTTCCACATTAAATATTGTGGGAACTAGGGGTTATATGGCTCCGGAGTATGTTGAAGCAGGGATAGTCACTTCTAAAATGGACGTCTATGCCTTTGGAGTGGTGCTGCTGGAATTGATCACAGGTAAAGATTCTATTATTGAGCAAGATGGAAGAGAAGTGATGCTTTCAGCAGTCATGGTGAATCTAATTGATGAAGATGATGCAGAAGAGAAACTTAGTTTGTTCATTGATCCTCGCCTCAGTGGAAATAGTGGGAAATTATTTGCTCTTCAGATAGTTAGACTGAGTCTAGCATGCTTGATGGAAGAACCTGCAAGGAGACCAAATATGGCAGAGGTAGTCTCTAGCTTATTAAAAATATATTCAGAAATGAACAGAAGAATATCACCCAGTATGTATAGGCAGTAG 1896 0.4035 MDHIVLLILLTQSFLLCSNVTAQQNYSGNSILDCKNNDTMGPSPAFLYTCNGLNKSCLSFLIFKSQPPYTTTITISNLTSSNPEELARINNATIFTVFPTGKEVIVPVNCSCLTRDYYQAESKYVLPPKPTYLIVANNTYQGLSTCDSLIRANPYGVLDLLPGMELHVPLRCACPTKNQITMNSTKYLLTYPVNWGDNITNIAKRFNVTAASLVDANGFSSENQILYPFTTVLIPLTSEPKSSITIIHKDQPAPSPPNVSIFRSNNKTKRKLLVSLATTGSFILVLCVVLSAVFLFRKGRARFFKRGTKGKTVPVSSEDIREEIACIEHLSKVYTLKEIEDATENFSLKNRIKGSVYRGVLGNDRDILAIKKMNADASKEVNLLGRINHFNLIKLKGYCKNNGFFCLVFEYMANGSLREWLGKSGSTGHNSWAKRIQIALDIANGLEYLHNFTEPCYVHKGISTDNILLNNDLRAKIANFTLAEESKSEVTTGSPSSTLNIVGTRGYMAPEYVEAGIVTSKMDVYAFGVVLLELITGKDSIIEQDGREVMLSAVMVNLIDEDDAEEKLSLFIDPRLSGNSGKLFALQIVRLSLACLMEEPARRPNMAEVVSSLLKIYSEMNRRISPSMYRQ. 632
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00588 631 Pfam LysM domain 193 235 IPR018392 -
Seca4g00588 631 CDD LysM 190 234 IPR018392 -
Seca4g00588 631 Gene3D LysM domain 175 245 IPR036779 -
Seca4g00588 631 FunFam PTI1-like tyrosine-protein kinase 3 412 625 - -
Seca4g00588 631 ProSiteProfiles Protein kinase domain profile. 298 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00588 631 PANTHER LYSM-DOMAIN RECEPTOR-LIKE KINASE-RELATED 6 620 - -
Seca4g00588 631 SUPERFAMILY Protein kinase-like (PK-like) 329 613 IPR011009 -
Seca4g00588 631 Pfam Protein kinase domain 354 611 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00588 631 Gene3D Transferase(Phosphotransferase) domain 1 412 628 - -
Seca4g00588 631 Gene3D Phosphorylase Kinase; domain 1 317 411 - -
Seca4g00588 631 ProSiteProfiles LysM domain profile. 189 234 IPR018392 -
Seca4g00588 631 SMART LysM_2 190 235 IPR018392 -
Seca4g00588 631 SUPERFAMILY LysM domain 189 235 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00588 Seca-Chr4 9706221 9708116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00588 3 616 Receptor kinase-like Gene Family AT2G23770 38.535 7.31e-127 385
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Seca4g00588 Pkinase 9.6e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00588 - - gmx:100806221 820.846