Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00578 ATGACTTCGGACGGAGCAACTTCTGCGGCGAACAATCGGAGGAAGCCGTCGTGGAGGGAGAGAGAGAACAACCGGAGGAGAGAAAGGCGGAGAAGAGCCATAGCAGCAAAGATATACACTGGACTTAGGGCTCAGGGGAATTACAACTTGCCCAAACACTGTGATAACAATGAGGTCTTGAAGGCTCTCTGTGCTGAAGCTGGTTGGACCGTAGAAGAAGACGGCACCACCTATCGCAAGGTAGGATCCAGGCCAGCACCCCCAGGAGATGGTGCAGGAACTTCCACCAGAAACACCCCTTTTTCTTCACAAAATCCAAGTCCTCTTTCGTCATCTTTTCCCAGCCCAATTCCATCCTACCAAGTTAGCCCCTCCTCCTCTTCATTTCCAAGCCCCTCTCGTTTGGATGTCAACAACGCATCAAACCTCATTCCATACATTCGGACTGTGTTCCCTGCGTCACTCCCTCCTTTAAGAATATCAAACAGTGCCCCTGTAACGCCTCCTCTATCATCACCAACCTCAAGAAATCCTAAACCAATTCCCACATGGGAATCAATTGCCAAGGCATCTATGGGATCCTTTAATCACCCTTTCTTTGCAGCTTCTGCCCCTGCTAGCCCATCACATCGCCACCTTTATACCCCACCCACCATACCTGAATGTGATGAGTCTGACACTTCCACTGTTGAGTCTGGCCAGTGGTTGAATTTCCAAGCCTTTGCACCTTCTGCATCTGCGATGCCTATCTCCCCCACTCTGAACTTTATTAAACCTGCAACTGCAAGTCAGCAGCAAAACCTGCAGCCTGATAATAACAGAATCCGAGAAATGAGAAGTTCTGAGGCAGAGTTTGGAGTACAGGTGAAGCCTTGGGTTGGGGAAAGGATTCATGAAGTGGGATTGGATGATTTGGAGCTCACACTTGGAAGTGGGAAGCCGCCTAGTTAG 951 0.4963 MTSDGATSAANNRRKPSWRERENNRRRERRRRAIAAKIYTGLRAQGNYNLPKHCDNNEVLKALCAEAGWTVEEDGTTYRKVGSRPAPPGDGAGTSTRNTPFSSQNPSPLSSSFPSPIPSYQVSPSSSSFPSPSRLDVNNASNLIPYIRTVFPASLPPLRISNSAPVTPPLSSPTSRNPKPIPTWESIAKASMGSFNHPFFAASAPASPSHRHLYTPPTIPECDESDTSTVESGQWLNFQAFAPSASAMPISPTLNFIKPATASQQQNLQPDNNRIREMRSSEAEFGVQVKPWVGERIHEVGLDDLELTLGSGKPPS. 317
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00578 316 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g00578 316 Pfam BES1/BZR1 plant transcription factor, N-terminal 12 139 IPR008540 -
Seca4g00578 316 MobiDBLite consensus disorder prediction 76 133 - -
Seca4g00578 316 MobiDBLite consensus disorder prediction 92 133 - -
Seca4g00578 316 PANTHER BES1/BZR1 HOMOLOG PROTEIN 3-RELATED 7 313 IPR033264 GO:0003700|GO:0006351|GO:0009742
Seca4g00578 316 MobiDBLite consensus disorder prediction 14 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00578 Seca-Chr4 9418779 9420946 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00578 1 313 BZR Transcription Factor Family AT1G75080 66.667 3.20e-123 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF BES1 Seca4g00578 BES1_N 4.8e-59 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00578 K14503 - gmx:100803869 461.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00578 4 9418779 9420946 Seca4g00578 4 9418779 9420946 ECH
Seca4g00578 4 9418779 9420946 Seca4g00578 4 9418779 9420946 PCT