Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00553 ATGGAACTGCATCGAGGATTGCTCAAGGCAGCTTTATTCTTGTTATTTATTCAGTTTGGTTTAGGCAGAAGAATGGGTTTGCACTCCACAACCGAATTGTTGCCGTTACTGCAACTTCGCTCATCGTTGGAGATTAGTGGCAAAGACTGGCCCATAAAAACCGAACCGTGCCATAACTGGACCGGAATTCAGTGCCAGACCGGTCGAGTCGTGAGTATCAACTTGACCGGTTTAAGACGAACCCGAACCGGTCGTCTCAGAACCCGGTTCGAAGTGGATTCTCTTGCGAATCTTACTCTTTTGCGTTCGTTCAGTGCTTCCGGTTTTTCACTGAACGGGTCCATTCCCGGTTGGTTTGGGTATCGCCTTAGGAAACTCGAAAAGCTCGATCTCCGGTCTTGCTCACTCACCGGTTCGATTCCTAACTCTTTCTCTTCCCTTTCCCATCTTAAGTTGCTTGACCTTTCTTCCAATTTTCTATCTGGGTCTATTCCTCCTCATCTGGGTGCACTTTCTAATCTCCAAATTTTGAATCTTTCACGCAATGCCCTCACTTCTTCACTTGCTCCTCAATTGGGTAGCCTTTCCAACTTGGTTCGACTTGATGTTAGCAAGAATTTTCTATCTGGGTCGTTGCCACATGCTTTGTTTTCAAATCTTTCTAAGCTTCAAATGCTCATTCTCAGTGAAAATATGTTTGATGGTGCTCTTCCTGCTACGTTGTGGTCAATTCTCCCCAACTTGCACTTTCTTGATGTGTCCAGCAACACCCTCACTGGTCCCCTGCCTAAACTCACTAGTTTGAGAAGTACTAATTATAGTGGTGCCACATTCAATCTCTCAAACAATTTGTTCTATGGGCCTCTGAATCTGAATTATACTTTGCTTAGCAAGTTTAAGATAATTGATTTGTCCAGTAATTATTTCCAAGGTGAGGTGCAAGTTGGTGGTTTTAAATTTGCTAATAGTGTTAGTCTTGCTAAAAACTGCTTACAGATGATTCCAAACCAGAGGGATTTCAGGGATTGTAGTGTGTTTTATTCTGAGAGAAATTTACCCTTTAGTCCCGGTGCCCCAGAACCAATGCAATCGCCCTTGCAAGATTCTAAGTCCAGGAACAAGAACAACAACAACAAACGAGTGATATTCATAGTGGCAGGTATATTTGGTGGTCTTGGTTTCGCTGTGCTTCTGGTATTGGTCCTCTTACTGCTTCTAAAACGATGTGATAGTCATAATAGCATTGTAATTCAAAGGGGGACCCCAAATGTGGGGGCTGATATAGAAGTGGAAAGTCCTATACCTCCCAAGGATCCTGACTTTGTAGCTGGCATAGGGGAATTATTTACTCATGAGCAAGTGCTCCGTTTGACTGATAATTTTGCTGAAGTAAATTTAATCAAGCATGGTCATTCTGGAGACCTCTTCAAGGGAACCTTAGAAGGTGGAGTAACCGTGGTTGTTAAAAAGGTAGATTTGAATTTATGTAAGAATGAATCATTCATGGTGGAGTTAGGACTATTAAGCAAGGTTACACATGCAAGATTGGTCCCACTCTTGGGGCACTGCTTGGAGAATGAGCATGAGAAATATATAATTTACAAGCATATGCCAAATGGAGATTTGGCTACTTCCTTGCACAGAGTCAACTGTTCAGATGATAAATTAGAGTCTCTGGATTGGATCACGAGATTGAAAATTGCAATAGGAGCTGCTGAAGGCCTATCTTACCTACATGAATGCAGCCCTCCTCTAGTTCACAGAGATGTCCAAGCAAGCAGTATACTTCTTGATGATAAATTTGAAGTGCGACTTGGAAGTTTAAGCAAGGTTACTGCCCAAGGAGATCTTCATCAGAGCGTCATTTCAAGGATTTTCTGCAAGTCATCGTAA 1893 0.4253 MELHRGLLKAALFLLFIQFGLGRRMGLHSTTELLPLLQLRSSLEISGKDWPIKTEPCHNWTGIQCQTGRVVSINLTGLRRTRTGRLRTRFEVDSLANLTLLRSFSASGFSLNGSIPGWFGYRLRKLEKLDLRSCSLTGSIPNSFSSLSHLKLLDLSSNFLSGSIPPHLGALSNLQILNLSRNALTSSLAPQLGSLSNLVRLDVSKNFLSGSLPHALFSNLSKLQMLILSENMFDGALPATLWSILPNLHFLDVSSNTLTGPLPKLTSLRSTNYSGATFNLSNNLFYGPLNLNYTLLSKFKIIDLSSNYFQGEVQVGGFKFANSVSLAKNCLQMIPNQRDFRDCSVFYSERNLPFSPGAPEPMQSPLQDSKSRNKNNNNKRVIFIVAGIFGGLGFAVLLVLVLLLLLKRCDSHNSIVIQRGTPNVGADIEVESPIPPKDPDFVAGIGELFTHEQVLRLTDNFAEVNLIKHGHSGDLFKGTLEGGVTVVVKKVDLNLCKNESFMVELGLLSKVTHARLVPLLGHCLENEHEKYIIYKHMPNGDLATSLHRVNCSDDKLESLDWITRLKIAIGAAEGLSYLHECSPPLVHRDVQASSILLDDKFEVRLGSLSKVTAQGDLHQSVISRIFCKSS. 631
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00553 630 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 94 606 - -
Seca4g00553 630 ProSiteProfiles Protein kinase domain profile. 461 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00553 630 Gene3D Ribonuclease Inhibitor 189 353 IPR032675 -
Seca4g00553 630 SUPERFAMILY Protein kinase-like (PK-like) 442 606 IPR011009 -
Seca4g00553 630 Gene3D Phosphorylase Kinase; domain 1 442 536 - -
Seca4g00553 630 Gene3D Transferase(Phosphotransferase) domain 1 537 629 - -
Seca4g00553 630 SMART tyrkin_6 461 626 IPR020635 GO:0004713|GO:0006468
Seca4g00553 630 FunFam Leucine-rich repeat receptor protein kinase EMS1 140 240 - -
Seca4g00553 630 Pfam Protein tyrosine and serine/threonine kinase 467 606 IPR001245 GO:0004672|GO:0006468
Seca4g00553 630 PRINTS Leucine-rich repeat signature 150 163 - -
Seca4g00553 630 PRINTS Leucine-rich repeat signature 171 184 - -
Seca4g00553 630 SMART LRR_typ_2 123 146 IPR003591 -
Seca4g00553 630 SMART LRR_typ_2 147 170 IPR003591 -
Seca4g00553 630 SMART LRR_typ_2 171 194 IPR003591 -
Seca4g00553 630 SMART LRR_typ_2 195 219 IPR003591 -
Seca4g00553 630 SMART LRR_typ_2 220 243 IPR003591 -
Seca4g00553 630 SMART LRR_typ_2 245 268 IPR003591 -
Seca4g00553 630 Pfam Leucine rich repeat 124 184 IPR001611 GO:0005515
Seca4g00553 630 FunFam Predicted protein 433 536 - -
Seca4g00553 630 FunFam - 537 629 - -
Seca4g00553 630 SUPERFAMILY L domain-like 47 314 - -
Seca4g00553 630 Gene3D Ribonuclease Inhibitor 30 188 IPR032675 -
Seca4g00553 630 MobiDBLite consensus disorder prediction 354 373 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00553 Seca-Chr4 9018720 9022798 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00553 31 626 Miscellaneous Gene Families AT2G16250 44.279 3.43e-170 500
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIV Seca4g00553 PK_Tyr_Ser-Thr 3.3e-19 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00553 - - pcin:129301220 629.402