Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00550 ATGGCGTCAAGCTCGGTTTGGACGGCAAAGCAGAACAAAAGATTTGAGAATGCGTTGGCGATCTATGACGAGGGCACTCCAGATCGGTGGCAGAAACTGGCGAGAGCCGTCGGAGGGAAGACGGTTGAGGAAGTGAAAATGCATTATGAGAAGCTTGTCGAAGACGTTAAGCAGATCGAGGAAGGCCACGTGCCCCTACCTAATTACCGAAATGTTGTTGCAACTGTTGGAGTTGGAGGCCACGCCATCAAAGGTTACAGTTATATGGATGAAGAAAAAAGGGATGAAGGCTCTAAGTCTCCAGTGAAGTGTGATTTACCAATGATATGCAGGACAGGGTTGATACTATAA 351 0.4758 MASSSVWTAKQNKRFENALAIYDEGTPDRWQKLARAVGGKTVEEVKMHYEKLVEDVKQIEEGHVPLPNYRNVVATVGVGGHAIKGYSYMDEEKRDEGSKSPVKCDLPMICRTGLIL. 117
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00550 116 SMART sant 3 55 IPR001005 -
Seca4g00550 116 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 3 71 IPR044636 GO:0003700
Seca4g00550 116 ProSiteProfiles Myb-like domain profile. 1 53 IPR001005 -
Seca4g00550 116 ProSiteProfiles SANT domain profile. 2 57 IPR017884 -
Seca4g00550 116 CDD SANT 7 53 IPR001005 -
Seca4g00550 116 FunFam Transcription factor SRM1 1 66 - -
Seca4g00550 116 Gene3D - 1 66 - -
Seca4g00550 116 SUPERFAMILY Homeodomain-like 5 60 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00550 Seca-Chr4 9004284 9005072 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g00550 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00550 - - gmx:100804049 155.606
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00550 4 9004284 9005072 Seca4g00550 4 9004284 9005072 ECH
Seca4g00550 4 9004284 9005072 Seca4g00550 4 9004284 9005072 PCT