Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00545 ATGGGTTGGACACGAGAAGAGAACAGGCGTTTTGAGGATGCTCTTGCGGTACATGGCCCAGATGACCCTAATCGGTGGCAACATGTGGCCAGCGCTGTTGGTGGTGGGAAATCCGTAGAAGAGGTGAAAGTTCACTACGAGATCCTCAAGGAGGATGTCATTCGAATAGAGCGTGATCAAATCCCTCTACCCAGGTACATCGATGGAAGGCACATTATTGGCAATGACCAAAGGCGAATGAGGAATCTAAATCTCCATTGA 261 0.4904 MGWTREENRRFEDALAVHGPDDPNRWQHVASAVGGGKSVEEVKVHYEILKEDVIRIERDQIPLPRYIDGRHIIGNDQRRMRNLNLH. 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00545 86 SMART sant 3 52 IPR001005 -
Seca4g00545 86 SUPERFAMILY Homeodomain-like 3 57 IPR009057 -
Seca4g00545 86 CDD SANT 3 50 IPR001005 -
Seca4g00545 86 ProSiteProfiles Myb-like domain profile. 1 50 IPR001005 -
Seca4g00545 86 Gene3D - 2 52 - -
Seca4g00545 86 FunFam Transcription factor SRM1 1 63 - -
Seca4g00545 86 Pfam Myb-like DNA-binding domain 3 46 IPR001005 -
Seca4g00545 86 ProSiteProfiles SANT domain profile. 1 54 IPR017884 -
Seca4g00545 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 2 68 IPR044636 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00545 Seca-Chr4 8950052 8951602 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Seca4g00545 Myb_DNA-binding 3.1e-07 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00545 - - gmx:100786029 137.887