Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00531 ATGATGAAGCATTGGTTCTTTCTGGTTTTCCTAGTTCTCTGTGTGACACTAGAGCAGGGGATCCTACTCCATGTAGAAGCAGATGCTGGGTTTGTGAAAGTAAAAGGAGTGCAGCTTATGCTGAATGGAAGCCCCTACTATGCCAATGGTTTTAATGCCTATTGGCTAATGTATTTTGCCTCTGATCCATCTCAGAGAAACAAGGTCTCCTCAACTTTTCAAGAGGCTGCAAATCATGGACTTAACATAGCCAGGACTTGGGCTTTCAGTGATGGTGGATATAAGCCCCTTCAATACTCTCCTGGATCTTACAATGAGGAAATGTTCCAGGGATTGGACTTTGTAATAGCTGAAGCCAGAAAATATGGGATCAAGCTGGTGTTGAGTTTGGTGAATAACTATGAGAACTTAGGAGGAAAGAAACAATATGTGGAGTGGGCAAGGAGTCAGGGCCAGTCCATAAATTCTGAAGACGATTTCTTCACAAATCCTGCAGTGAAGGGATACTACAAAAACCACATCAAGGTAATAATAATTATACATACTGTACTTACAAGACGTAACAGCGTCACTGGAGTTGCATACAAAGACGACCCCACAATAATGGCTTGGGAGCTTATGAATGAGATTAGATGCCTTTCAGATCAATCGGGAAACTCGGTTCAGGGTTGGATAAGTGAGATGGCATCTTACTTGAAATCGATAGATGGGAATCACTTGCTTGAAGCTGGTTTGGAGGGTTTCTACGGAAAGTCAAAGGCAGAGTCAAACCCTAACTTCCAAGTAGGAACGGATTTCATTGCAAACAACCAAATCCCCGGCATTGATTTCGCAACGGTTCACTCCTACCCGGATCAATGGCTAACGAGTTCAGGTTATGAAGACCAAATATCATTCTTAAGTGGGTGGCTCAATGAGCACATTCAAGATGCACAGAACATCCTTCACAAGCCACTTTTATTTGCAGAGTTTGGTATTTCAACAAAAACTTTTGGTGGCAACTCAACACCAAGGGATCGGTTTTTCGACACTGTATATTCAGCAATATATTCATCAGCGAGTGGTGGCGGTGCTGCTGTTGGTGGTTTGTTTTGGCAACTTTTAGATCAAGGGATGGATTCATTTCGAGATGGTTATGAAGTGGTCTTGGGTGAAAGCCCCTCAACAGCTACCTTGATTGCTCAACAGTCTCAGAAACTAAACCGAATTCGCAAGATGTACGCCAGACTCAGAAACATAGAGAAGTGGAACAAAGCAAGGGAAATTAGAGGCACTAGTGGCCGAAACTGA 1290 0.4302 MMKHWFFLVFLVLCVTLEQGILLHVEADAGFVKVKGVQLMLNGSPYYANGFNAYWLMYFASDPSQRNKVSSTFQEAANHGLNIARTWAFSDGGYKPLQYSPGSYNEEMFQGLDFVIAEARKYGIKLVLSLVNNYENLGGKKQYVEWARSQGQSINSEDDFFTNPAVKGYYKNHIKVIIIIHTVLTRRNSVTGVAYKDDPTIMAWELMNEIRCLSDQSGNSVQGWISEMASYLKSIDGNHLLEAGLEGFYGKSKAESNPNFQVGTDFIANNQIPGIDFATVHSYPDQWLTSSGYEDQISFLSGWLNEHIQDAQNILHKPLLFAEFGISTKTFGGNSTPRDRFFDTVYSAIYSSASGGGAAVGGLFWQLLDQGMDSFRDGYEVVLGESPSTATLIAQQSQKLNRIRKMYARLRNIEKWNKAREIRGTSGRN. 430
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00531 429 SUPERFAMILY (Trans)glycosidases 31 392 IPR017853 -
Seca4g00531 429 Gene3D Glycosidases 27 404 - -
Seca4g00531 429 Pfam Cellulase (glycosyl hydrolase family 5) 49 330 IPR001547 GO:0004553|GO:0071704
Seca4g00531 429 PANTHER - 5 422 IPR045053 GO:0004553
Seca4g00531 429 Coils Coil 393 413 - -
Seca4g00531 429 FunFam Mannan endo-1,4-beta-mannosidase 6 28 404 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00531 Seca-Chr4 8769253 8774225 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00531 2 420 Glycoside Hydrolase AT5G66460 61.939 0.0 533
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00531 K19355 - gmx:100794126 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00531 4 8769253 8774225 Seca4g00531 4 8769253 8774225 ECH
Seca4g00531 4 8769253 8774225 Seca4g00531 4 8769253 8774225 PCT