Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00523 ATGTCCGGGCACGTTTGCTTTGAAGGATTCTCCGGCCATGATGAAAGAAGAGAGGATTTAGAGGATGATAGGTGGACAAGAATTGGCAGCTTAACAAAGAAAGCAATAAATGCTTCCACCAAATTCAGGCATTCTCTTAAGAAGAAAAGAAGCAGAAAAAGTGTCAGTCGTAGCAATTCCCTTTCCATTGAGGATATCCAAGATGCTAAGGAGCTTCAAGCAGTGGAGGCATTTCGACAAGCACTTATATTGGATAACTTGCTGCCTCCAATACATGATGACTATCACATGTTACTGAGATTCTTGAAGGCAAGGAAATTTGATATTGAGAAAGCAAAGCACATGTGGGCCAACATGATCCAATGGAGGAAAGACTATGGTACAGATACAATTATAGAGGATTTTGAATTCAAGGAGTTGAATGAAGTCCTGGAGTACTATCCACATGGTTATCATGGTGTAGATAAGGAAGGAAGACCTGTTTATATTGAGAGGCTTGGGAAAGTTGATCCCAATAAGCTTATGCAAGTAACTACCACAGAAAGGTATTTGAGATACCATGTGCAGGGTTTTGAGAAAGCATTTGCTGTCAAGTTTCCAGCTTGCTCTATAGCAGCTAAGAGACACATAGATTCAAGTACAACCATTTTGGATGTTCAAGGCGTGGGTTTCAAAAACCTAACAAAGTCTGCACGGGAACTCATCACCCAACTGCAGAAGATTGATGGTGATTACTATCCTGAAACACTCTACCAAATGTTTATCATCAATGCTGGTCCTGGTTTTAAGCTTCTCTGGAACACAGTCAAAACATTTCTTGATCCCAAAACTACTTCAAAGATCCATGTTCTTGGGTACAAGTTCCAGAGTAAGTTGCTTGAGATCATTGATGTGAGTGAGCTGCCAGAATTTCTAGGAGGTAGTTGCACTTGTGTAGATCAGGGTGGTTGTATGAGGTCTGATAAAGGGCCATGGCAAGAACCAAATATTTTAAAGATGGTTCTTGGTGGTAAAGTACAATATTCTAAACAAATAATATCAGTTTCTAATGATGAGGAGAGGGTAATTGAAAGTGATAAGAGATATTATCCCATGGTACAGTTTCCAATACAATCTTAG 1119 0.3968 MSGHVCFEGFSGHDERREDLEDDRWTRIGSLTKKAINASTKFRHSLKKKRSRKSVSRSNSLSIEDIQDAKELQAVEAFRQALILDNLLPPIHDDYHMLLRFLKARKFDIEKAKHMWANMIQWRKDYGTDTIIEDFEFKELNEVLEYYPHGYHGVDKEGRPVYIERLGKVDPNKLMQVTTTERYLRYHVQGFEKAFAVKFPACSIAAKRHIDSSTTILDVQGVGFKNLTKSARELITQLQKIDGDYYPETLYQMFIINAGPGFKLLWNTVKTFLDPKTTSKIHVLGYKFQSKLLEIIDVSELPEFLGGSCTCVDQGGCMRSDKGPWQEPNILKMVLGGKVQYSKQIISVSNDEERVIESDKRYYPMVQFPIQS. 373
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00523 372 SMART CRAL_TRIO_N_2 94 119 IPR011074 -
Seca4g00523 372 SUPERFAMILY CRAL/TRIO N-terminal domain 68 135 IPR036273 -
Seca4g00523 372 Pfam CRAL/TRIO, N-terminal domain 95 118 IPR011074 -
Seca4g00523 372 SMART sec14_4 139 310 IPR001251 -
Seca4g00523 372 CDD SEC14 140 307 IPR001251 -
Seca4g00523 372 Pfam CRAL/TRIO domain 145 307 IPR001251 -
Seca4g00523 372 FunFam SEC14 cytosolic factor 127 339 - -
Seca4g00523 372 Gene3D - 19 126 - -
Seca4g00523 372 ProSiteProfiles CRAL-TRIO lipid binding domain profile. 139 313 IPR001251 -
Seca4g00523 372 PANTHER CRAL-TRIO DOMAIN-CONTAINING PROTEIN YKL091C-RELATED 20 344 - -
Seca4g00523 372 Gene3D - 127 337 IPR036865 -
Seca4g00523 372 SUPERFAMILY CRAL/TRIO domain 139 333 IPR036865 -
Seca4g00523 372 PRINTS Cellular retinaldehyde-binding protein signature 299 308 - -
Seca4g00523 372 PRINTS Cellular retinaldehyde-binding protein signature 266 285 - -
Seca4g00523 372 PRINTS Cellular retinaldehyde-binding protein signature 97 119 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00523 Seca-Chr4 8664643 8669620 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00523 73 304 Acyl Lipid Metabolism Gene Families AT5G47730 28.807 3.57e-21 91.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00523 K26544 - gmx:100811161 610.527