Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00522 ATGGAATCTAACAATCTCCATCACCTCCAAGACCAACCTCTTGAAGCTTCTTCTTCTAATTTATCTACCCCATCTTCCTGCAGCTATGGTGGAACCACCCATTCTTGGACTCCAAATATCACTTTGAATGCAGGTAACAACTTCAACCTCCAAGAAGCTAATCACAGATCAAGAGCTTCAATGATCCAAGATTTAGGTTATCATCACAATCACTGGCCAAGTGATGCAGAAAGCTGCTGCTTGACCAGCAACAACAACAACCAGTTTTCCAAGATTAAGGAAGAGATCTCTGTTGCTAATTTCCCTCCCAAATTCAGTGATATGCTAAACAACAGCATGGAAGGCTATGGACTAATCCCTTCCACCACTTCCACAACAACACAGATCATGAAGAGTAATATTGATCAGCACAAGGATAATAATATGAATGTTGCTCTCTGTAGTGACAAGCTCTTGCTCAAGACACTTTTTTCTGGAGACATGTACTCCACTACTAGTCCTCAAAATTATCCTAATAGTAATTTTGGTACTGGTGGAACTAGTAGAGTGAACTTTAGCCAGATTTACCCCAGTATAAATATCTCAAACTTGAACCACTCTTCAAGCTCCTTGGATATGAGAACACAGTCCTTAGATCTATTAACCTCACCAACATCATTTACTTCAGCTAATTCACAAGATCAGAGTAGATTTACTGACAACCTTTCTTTTGGTCTTCAACAAATGCAGCATCCCTTTGACAGGTCCTCCACCAGTAACTCTAGTAATGTATCACAATTCACCAATGGCATGGCAGAAACAAAGAGATCCTGCACTTTGATGGAGACAAAGGTTTCTCAATCTCAAAATGCGGCATCTAAGAAATCACGATTGGAATCATCACGCCCTTCATGCCCACCCTTTAAGGTTAGGAAAGAGAAACTAGGAGATAGGATTGCGGCTCTTCAGCAGTTGGTGGCTCCTTTTGGCAAGACAGACACAGCATCCGTGCTCATGGAAGCTATTGGATACATTAAATTCCTTCAAGGCCAAGTCGAGACACTGAGCGTTCCATACATGAAGTCATCACAGAACCAGACCAACAGATCAGTGATGCAAGGGCAGGGTAATTCAGAGGCAAATGGGGAAGCAAAGCAAGATCTTAGAAGCCGAGGCCTGTATCTGGTGCCATTGTCATGCATGTCCTACATAGCAGGTGATGGCGGTAGTGACGTGTGGCAACAGCCAAACTTTGGTAGACCAACTTAG 1248 0.4263 MESNNLHHLQDQPLEASSSNLSTPSSCSYGGTTHSWTPNITLNAGNNFNLQEANHRSRASMIQDLGYHHNHWPSDAESCCLTSNNNNQFSKIKEEISVANFPPKFSDMLNNSMEGYGLIPSTTSTTTQIMKSNIDQHKDNNMNVALCSDKLLLKTLFSGDMYSTTSPQNYPNSNFGTGGTSRVNFSQIYPSINISNLNHSSSSLDMRTQSLDLLTSPTSFTSANSQDQSRFTDNLSFGLQQMQHPFDRSSTSNSSNVSQFTNGMAETKRSCTLMETKVSQSQNAASKKSRLESSRPSCPPFKVRKEKLGDRIAALQQLVAPFGKTDTASVLMEAIGYIKFLQGQVETLSVPYMKSSQNQTNRSVMQGQGNSEANGEAKQDLRSRGLYLVPLSCMSYIAGDGGSDVWQQPNFGRPT. 416
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00522 415 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 302 355 IPR036638 GO:0046983
Seca4g00522 415 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 292 341 IPR011598 GO:0046983
Seca4g00522 415 FunFam Transcription factor bHLH123 family 302 364 - -
Seca4g00522 415 MobiDBLite consensus disorder prediction 277 293 - -
Seca4g00522 415 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 174 395 - -
Seca4g00522 415 MobiDBLite consensus disorder prediction 1 28 - -
Seca4g00522 415 CDD bHLH_AtbHLH_like 299 349 IPR045239 -
Seca4g00522 415 Gene3D - 302 366 IPR036638 GO:0046983
Seca4g00522 415 MobiDBLite consensus disorder prediction 277 302 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00522 Seca-Chr4 8654045 8658615 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00522 26 396 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 39.080 8.48e-65 212
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00522 - - mtr:25490216 431.795