Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00521 ATGTCAAAATCTCTGGAACTACCTGATTGTATCTATAATCCTGGCCAACCAGTTACTATTCCCCCAAATGCTCCAACACCAAAGCATTCCCTCTACCTCTCTAATCTTGATGACCAAAAGTTCCTGAGATTCTCCATTAAGTATTTGTACCTCTTCAAGAAATCAGTGAGCTTGGATATCTTGAAATCTTCTCTGTCCAGAGTTTTAGTGGATTATTACCCCTTAGCTGGGAGGTTGAGGACCAGTTCTGTGGATGATCATAAGCTTGAGGTGGATTGCAATGGGGAAGGTGCTGTGTTTGCTGAGGCTTTCATGCCAATCACTGCTGAAGAATTACTTGAACCTTCCAAGATTCCAAACAAGTCATGGAAGAAGTTCTTGTATAAGGTGGAAGCTCAGAGTTTCTTAGATGTTCCTCCTCTTATAGTCCAGATAACAAGTCTCCGTTGCGGGGGAATGATCCTGTGCACCGCAATCAACCACTGCCTATGCGATGGCATTGGCACGTCCCAGTTTTTACACGCTTGGGCACAACTCACCACGACTCCTCAAGCCGAATTGACCATCCTACCCTTCCATTGGCGCCACGTGCTGAAACCCAGAGACCCCCCTGTAGTAAAGTTCCGTAATCCTGGATACACCGTAACAAACCCAACACCTCAAGTGGAACTTGTCAAGTTCCTACAGTCACAGCCGTTAGTTCCCACATCCTTCACCTTCAGTCCCTCCCACGTCCTTCTCCTGAAGAAACAGTGCGTTCCGTTACTCAAATGCACGACATTCGAAGCGCTCGCGGCACACACGTGGCGCTCGTGGATTCGATCACTGGACCTAACCTTACCTTCCAACCTCGTTGTGAAACTCCTTTTCTCAATTAACATTCGCACAGCAGTGAACCTACCAAAAGGGTACTATGGAAATGGGTTCCTGCTAGGATGCGCCGAAAGTAGCGTAAAGGAGTTAGTGGAAGGTAATAACCTGCGCCACGGTGTGAGGGTAGTGCAGGAAGCGAAGGCAAGGGTGAATGATGAGGAGTACGTGAGGTCAACGGTTGATTTGTTGGAGGACAAAAGGGTAAAAACGGATCTTACGACTAGTTTGGTTATATCACAGTGGTCGAGACTGGGGTTGGAGGAAGTGGATTTTGGAGAGGGAAAAGCATTGCAAATGGGTCCTTTAACGAGTGATATTTATTGCTTGTTTTTACCGGTGATGGGTGATGCTAATGCGGTGAGAGTGCTTGTGTCAGTGCCGGAAAGTATGGTGGAAAGTTTTCACTATCACATGAAAGAAAGCTGCAGGGAAAATATCATAAAAGAAAATGGAGATGTTAAGAATAGGTATCGTGCACATCAAAATGGATTCTTCTGA 1371 0.461 MSKSLELPDCIYNPGQPVTIPPNAPTPKHSLYLSNLDDQKFLRFSIKYLYLFKKSVSLDILKSSLSRVLVDYYPLAGRLRTSSVDDHKLEVDCNGEGAVFAEAFMPITAEELLEPSKIPNKSWKKFLYKVEAQSFLDVPPLIVQITSLRCGGMILCTAINHCLCDGIGTSQFLHAWAQLTTTPQAELTILPFHWRHVLKPRDPPVVKFRNPGYTVTNPTPQVELVKFLQSQPLVPTSFTFSPSHVLLLKKQCVPLLKCTTFEALAAHTWRSWIRSLDLTLPSNLVVKLLFSINIRTAVNLPKGYYGNGFLLGCAESSVKELVEGNNLRHGVRVVQEAKARVNDEEYVRSTVDLLEDKRVKTDLTTSLVISQWSRLGLEEVDFGEGKALQMGPLTSDIYCLFLPVMGDANAVRVLVSVPESMVESFHYHMKESCRENIIKENGDVKNRYRAHQNGFF. 457
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00521 456 Gene3D - 219 431 IPR023213 -
Seca4g00521 456 Gene3D - 15 215 IPR023213 -
Seca4g00521 456 PANTHER TRICHOTHECENE 3-O-ACETYLTRANSFERASE 20 425 - -
Seca4g00521 456 Pfam Transferase family 19 430 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00521 Seca-Chr4 8528416 8531650 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00521 22 392 Monolignol Biosynthesis Gene Families AT5G48930 27.295 1.35e-37 140
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00521 - - gmx:100810619 712.605