Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00518 ATGATAAATTCATCCTTCAGGCGCAGGACCCACTTAGTTCAATCTTTCTCTGTTGTATTCCTCTATTGGTTCTATGTTTTTTCATTAATCTGCAGCAGTTTTAGATTTGGAAACTCCTCCAAAACTCAGAGCTCTGGCTCTGAAGAGGATTTGCAGATTCTGATGGATCAAAGGAAAAACAAGAGAAAGCAATCGAATCGTGAATCAGCAAGAAGATCTCGGATGAGAAAGCAGAATCACTTGGAAGATCTGACGAACCAGGTGTCTAAGCTCACAAAGGACAATGGTGAAATCCTCACAAACATAAACATCACAACACAGCACTATCTGAATGTTGAGGCAGAGAATTCCATTCTGAGGGCCCAGATGGGGGAACTTAATCAAAGGCTTCAATCACTAAATGATATCCTCAGTTTCATTGAGACAAACACTGGGTCCTATGAAAGGGATTGTTATCAAAGTGAACAAAATTGCATGAATATGCTCTATCTTAACCAACCCATTATGGCTTCTGCAGACATCTTTCAGTGGTGA 534 0.4026 MINSSFRRRTHLVQSFSVVFLYWFYVFSLICSSFRFGNSSKTQSSGSEEDLQILMDQRKNKRKQSNRESARRSRMRKQNHLEDLTNQVSKLTKDNGEILTNINITTQHYLNVEAENSILRAQMGELNQRLQSLNDILSFIETNTGSYERDCYQSEQNCMNMLYLNQPIMASADIFQW. 178
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00518 177 PANTHER BZIP TRANSCRIPTION FACTOR 44 39 174 - -
Seca4g00518 177 SUPERFAMILY Leucine zipper domain 58 111 IPR046347 GO:0003700|GO:0006355
Seca4g00518 177 FunFam BZIP transcription factor 56 108 - -
Seca4g00518 177 CDD bZIP_plant_GBF1 59 109 IPR045314 GO:0003700|GO:0006355
Seca4g00518 177 Gene3D - 56 111 - -
Seca4g00518 177 Coils Coil 67 101 - -
Seca4g00518 177 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 61 76 IPR004827 GO:0003700|GO:0006355
Seca4g00518 177 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 56 119 IPR004827 GO:0003700|GO:0006355
Seca4g00518 177 Coils Coil 109 143 - -
Seca4g00518 177 MobiDBLite consensus disorder prediction 58 79 - -
Seca4g00518 177 SMART brlzneu 54 118 IPR004827 GO:0003700|GO:0006355
Seca4g00518 177 Pfam bZIP transcription factor 58 108 IPR004827 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00518 Seca-Chr4 8381500 8382183 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00518 54 177 bZIP Transcription Factor Family AT4G34590 54.015 1.39e-41 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Seca4g00518 bZIP_1 1.5e-10 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00518 K25786 - rcu:8275772 184.111