Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00513 ATGTCCAACTCTATTACCCATCATCAAAACCAATTTGAGAACCAAGAGCTTGATGCTTATGGCTCTTCTCTAAGGAACAATAATGCATTTGGTGATGCCTTAGGAGCATTTCCCAGCATTCAATCTATTGGAGACAGAATATCAAGATCAATGGACCTTGTGCAAGCTCCTGTACTATCTGAGGGGTCTGAAATGAGCCACACAAGGCACTTGATGGATCTTCTTGGTGCAGCTAATGAGAACAATCACCACCAACCTCAAGCTCTCTCTCTCTCTTTAGGCTCTCACATGCTTCTCCCTTCTGATGAATACAGAAACCGATCCTTAACTCCAGGTCTCATGAACCCCAATTACTTCATTCCTGGACAAGAGGCACGTGAAGGTTGTAATCCACCAGTGGAGCATCTAACCAGTGACTATTTCTTCACCAGTGGTGGTGGTGGAAGTGGCACTTTTGCTTCATCTTCTGCCTCATTGAACCGTTCTCCTTCCACCTCCTATGGAGTGGAGTCTTTTGCTTCTGTCATTGGGAACTCAAGATACCTCAAACCAGTTCAGTCCCTTCTTGAAGACCTTGTTGATGTTGGTGGAAGTGTGATTGATAGAATCAATGAAAAGTATGCAGAGAAGTTGTTATTTCAAGGGAGTAGAACAGGAGCATGTGCTAGAACTCTTTCCTCTGAGCTAAAAGCAGAGTTGAGGAATAATGGACATTTATTGGCTGACAAACATGAACATCAAATGAAAATTGCAAAGTTGATTTCTTTGTTGGATGAGGTTGAGAGTAGGTATGAGAAATACTACCATCAAATGGAAGAAGTAGTGTCATCCTTTGAAATGATAGCAGGTCTTGGAGCTGCCAAGTGTTACACTGCTTTAGCACTCCAAGCTATGTCTAGGCATTTCTGCACCTTGAGAGATGCCATAGTGTCACAAATAAATGTGGAGAAAAGAAAACTCTTTCAGGATTTACCTAAAATCAGTAGTGGATTCTCTCAACTAAGCTTATTTGATAGAGATACTAGACAGAGTAGAATGTCTCTTCAACAGCTTGGAGTGATCCAAAGCCAACGGCAAGTATGGAGACCCATCAGAGGGTTACCTGAAACCTCTGTAGCAATTCTTCGTTCTTGGCTTTTTGAGCACTTTCTCCACCCTTATCCTAATGATTCTGAAAAGTTAATGTTGGCATCCCAGACAGGTCTAACTAAAAACCAAGTCTCAAATTGGTTCATAAATGCTAGGGTACGGCTATGGAAACCAATGATAGAAGAAATGTACAAAGAAGAGTTTGGAGACTCTTCAGAAGACTCCAACCCGGCTGCTAACAACTACTTAACAAGGGAGGATACCACTGATTGTGTGGAGGATTGA 1374 0.4207 MSNSITHHQNQFENQELDAYGSSLRNNNAFGDALGAFPSIQSIGDRISRSMDLVQAPVLSEGSEMSHTRHLMDLLGAANENNHHQPQALSLSLGSHMLLPSDEYRNRSLTPGLMNPNYFIPGQEAREGCNPPVEHLTSDYFFTSGGGGSGTFASSSASLNRSPSTSYGVESFASVIGNSRYLKPVQSLLEDLVDVGGSVIDRINEKYAEKLLFQGSRTGACARTLSSELKAELRNNGHLLADKHEHQMKIAKLISLLDEVESRYEKYYHQMEEVVSSFEMIAGLGAAKCYTALALQAMSRHFCTLRDAIVSQINVEKRKLFQDLPKISSGFSQLSLFDRDTRQSRMSLQQLGVIQSQRQVWRPIRGLPETSVAILRSWLFEHFLHPYPNDSEKLMLASQTGLTKNQVSNWFINARVRLWKPMIEEMYKEEFGDSSEDSNPAANNYLTREDTTDCVED. 458
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00513 457 Pfam Associated with HOX 175 310 IPR006563 -
Seca4g00513 457 Pfam Homeobox KN domain 378 417 IPR008422 GO:0003677|GO:0006355
Seca4g00513 457 SMART HOX_1 361 425 IPR001356 GO:0003677
Seca4g00513 457 MobiDBLite consensus disorder prediction 430 457 - -
Seca4g00513 457 Gene3D - 356 436 - -
Seca4g00513 457 SMART prehox3 170 311 IPR006563 -
Seca4g00513 457 CDD homeodomain 361 422 IPR001356 GO:0003677
Seca4g00513 457 PANTHER HOMEOBOX PROTEIN TRANSCRIPTION FACTORS 87 439 - -
Seca4g00513 457 ProSiteProfiles 'Homeobox' domain profile. 380 421 IPR001356 GO:0003677
Seca4g00513 457 SUPERFAMILY Homeodomain-like 367 429 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00513 Seca-Chr4 8332641 8337615 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00513 169 440 Homeobox Transcription Factor Family AT2G16400 50.178 2.07e-83 263
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-BELL Seca4g00513 POX 3.1e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00513 - - gmx:100792161 707.983