Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00501 ATGTTGAAATCAAGCGTGGGAAAGAAGCCATCTCAGGCCAGCTCCAGGAAGGGATGTATGAGAGGGAAAGGAGGTCCTGAGAATGCAAGTTGCAAATACAAAGGTGTGAGACAGAGAACTTGGGGGAAATGGGTTGCTGAAATCCGTGAACCCAACCGTGGCAATCGTCTCTGGCTTGGAACATTCCACACTTCACATGAAGCTGCCATAGCTTATGATGCTGCTGCACTTAAGCTTTATGGCTCAGCAGCCAAACTTAATCTCCCAGGTAACCTTGCTGCTTCTGGAGACAAATCTCAGTCTCCACCACCCCCTCAGATTCTTCACCAACAGCCTCAGATTCATGAGAACGTGGGCATGGTTACACCTACCTGTCCTAATTTCAATACCAACCCAGAAATCTCCATGGCTTCTCAGCAGGTTGGGGTTGGACCAATCTACACCAACACCACTGACTCCATCATGTCTATTCCCAACCCTAAGCCAATTGAGACCTATGCAAACCCCATTGAGAACCAGGGTCCTTCTTGGGACACAATGAATGGGGACTTACCAGCTCTTGATGATTCAGTCTGGGCAGAAGCTGCCATGGCCCTTGATTTTCCTCCTGTAATTGCAGACAATGGAATTTACGGAACTGGAGGAAACTTGGCAGATGTTGGAGGGTGGGACTCTCTGAACAATCCTTGGTGCATGTAA 699 0.485 MLKSSVGKKPSQASSRKGCMRGKGGPENASCKYKGVRQRTWGKWVAEIREPNRGNRLWLGTFHTSHEAAIAYDAAALKLYGSAAKLNLPGNLAASGDKSQSPPPPQILHQQPQIHENVGMVTPTCPNFNTNPEISMASQQVGVGPIYTNTTDSIMSIPNPKPIETYANPIENQGPSWDTMNGDLPALDDSVWAEAAMALDFPPVIADNGIYGTGGNLADVGGWDSLNNPWCM. 233
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00501 232 MobiDBLite consensus disorder prediction 1 31 - -
Seca4g00501 232 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 2C 8 140 - -
Seca4g00501 232 SUPERFAMILY DNA-binding domain 32 89 IPR016177 GO:0003677
Seca4g00501 232 FunFam Ethylene-responsive transcription factor 2 31 90 - -
Seca4g00501 232 Pfam AP2 domain 31 81 IPR001471 GO:0003700|GO:0006355
Seca4g00501 232 CDD AP2 31 89 IPR001471 GO:0003700|GO:0006355
Seca4g00501 232 SMART rav1_2 32 95 IPR001471 GO:0003700|GO:0006355
Seca4g00501 232 PRINTS Ethylene responsive element binding protein signature 55 71 IPR001471 GO:0003700|GO:0006355
Seca4g00501 232 PRINTS Ethylene responsive element binding protein signature 33 44 IPR001471 GO:0003700|GO:0006355
Seca4g00501 232 Gene3D AP2/ERF domain 31 90 IPR036955 GO:0003700|GO:0006355
Seca4g00501 232 ProSiteProfiles AP2/ERF domain profile. 32 89 IPR001471 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00501 Seca-Chr4 8212477 8213175 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00501 1 229 AP2-EREBP Transcription Factor Family AT1G75490 45.690 4.69e-50 160
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Seca4g00501 AP2 2.1e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00501 - - gmx:100790057 286.189
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00501 4 8212477 8213175 Seca4g00501 4 8212477 8213175 ECH
Seca4g00501 4 8212477 8213175 Seca4g00501 4 8212477 8213175 PCT