Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00492 TTGATTTGGTGCGGTGATTGTAAAAAAAAACTCTTCTTCTATAAAGCAGGAACATATTCACATCATCCATTCGTTTTGTGCTTGCGCATTTTGGAAATCCAGATGGAAAATGAATGTTGTGTTCTTCCCACGATGGATCTGCTACGATCGGAGCCTATGCAGCTGGTTCAATTGATCATTCCAATCGAAGCTGCTTATCGATCCATCTCTTACCTTGGCGATCTCGGCCTCTTCCAATTCAAAGACCTTAATGCAGACAAAAGCCCATTCCAACGAACTTATGCTGCTCAGATTAAAAGATGTAGCGAAATGGCACGTACGTTACGGTTATTTAAGGAACAAATGACGAGGGCAGGTGTGTCACCCTCAACGCGGTCAACAAGAGACGGTGAGGTTGATGTGGAAAATTTGGAGGTTAAACTTGCAGAACTTGAAGTTGAGCTACTGGAGATTAATGCAAATAATGAGAAGTTGCAACACTCCTACAATGAGCTGTCAGAGTATAAGCTTGTTCTAGAGAAGGTTGGTCATATTTTCTCTTCTGCACAAAATAGTGCTGTAGCTCACCAGAAGGAGATTGAAGTTCAGACGTTTGGTGAAGGGTCTATTGACAGCCCATTATTATTGGAACAAGAGACGACGACATATCCGTTAAAGCAGGTTAAGCTGGGGTTTATCAGTGGTCTTGTTCCTAGAGAAAAATCAATTCCTTTCGAAAGAATTTTATTTCGTGCTACTCGGGGAAATGTATTTCTGAAGCAGGCTGTGGTTACACATCCTGTTCTTGATCCTTTATCGGGAGAGAAGGTTCATAAAAATGTGTTTGTTGTATTTTACTCTGGAGAGAGAGTTAAAAACAAAATTCTGAAAATATGTGATGCTTTTGGAGCGAATCGTTATCCTTTCTCAGATGACTTGGGTAAACAATTTCAAATAATTACAGAGGTGTCAGGGCGACTTTCAGAATTAAAGACAACCATTGATGTAGGATTGCTCCATAGGAGCACTCTGTTGCAGACAATAGGATATCAATTTGAGCATTGGAGCCTTCTGTTGAAGAAGGAAAAATCCATTTATCACACTCTAAATATGCTAAGCATTAATGTGACGAAGAAATGTCTCCTTGCAGAAGGTTGGTCTCCTGTTTTTGCAACAAATCAGATTCAAAAAGTACTGCAGCGAGCAACTATGGATTGTAACTCTCAAGTTGGGGCAATATTTCATGTTTTACAGACAAAGGAACCACCGCCTACCTATTTTTGCACAAACAAGTTTACTTCTTCTTTCCAAGAAATTGTAGATGCTTATGGAGTTGCCAAGTACCAGGAAGTAAATCCTGGTGTATACACAATCATTACGTTTCCATTCCTTTTTGCTGTAATGTTTGGAGATTGGGGGCACGGCATTTGCTTATTACTGGCGACTTTGTATTTCATAATCAGAGAGAAAAAGTTTTCTTCTCAGAAACTCGGAGACATATTAGAAATGACTTTTGGAGGACGCTATGTTATTATGATGATGGCACTCTTCTCAATCTACACCGGGTTGATATATAATGAATTCTTCTCTATTCCATTTGAACTATTTGGACCATCTGCCTATGGATGCCGTGATCCTTCATGCAGGGATGCTTCTACAACAGGGTTAATAAAAGTGCATAGCACTTATCCATTCGGTGTGGATCCTAAATGGCATGGTACTCGGAGTGAACTTCCATTTCTTAACTCTTTGAAAATGAAGATGTCAATTCTGCTGGGAGTATCTCAGATGAATCTCGGGATTATATTGAGTTACTATAATGCAAAATACTTTGGAAACGACATAAATATCTGGTACCAGTTTGTTCCCCAGATGATATTCTTAAACAGCCTATTTGGCTACCTTTCACTCCTCATAATTGTAAAATGGTGCACTGGATCACAGGCTGACCTGTATCATCTTGTATTACTATTGTTGGCACTCGTTGCTGTACCGTGGATGTTATTACCAAAGCCCTTTCTCCTGAAGAAGCAACACGAAGAAAGGCATCGAGGTCAATCTTACTCTTTGCTCTACGGCGGGGAGGACCCTCTTGAATCAGAGTCACATGGTACTCCCCGTGACCATGAGGAGTTTGAGTTCAGCGAGGTTTTTGTGCACCAACTTATACATACAATAGAATTTGTACTCGGAGCTGTGTCTAATACAGCTTCATACCTACGTTTATGGGCCCTCAGTCTAGCTCATTCAGAGTTATCAAGCGTTTTTTATGACAAAGTTCTACTTCTGGCCTGGGGGTTTAACAACACCATTGTTCTCATTGTTGGCATTATTGTTTTTATATGTGCAACTGTTGGTGTGCTGCTGATAATGGAAAGTCTAAGTGCTTTCTTGCATGCCTTGAGACTTCACTGGGTAGAGTTCCAGAACAAATTTTATGAGGGAGATGGTTACAAGTTCATCCCATTTTCATTTACGACACTTACTGATGAAGATGAACTGTAA 2484 0.4018 LIWCGDCKKKLFFYKAGTYSHHPFVLCLRILEIQMENECCVLPTMDLLRSEPMQLVQLIIPIEAAYRSISYLGDLGLFQFKDLNADKSPFQRTYAAQIKRCSEMARTLRLFKEQMTRAGVSPSTRSTRDGEVDVENLEVKLAELEVELLEINANNEKLQHSYNELSEYKLVLEKVGHIFSSAQNSAVAHQKEIEVQTFGEGSIDSPLLLEQETTTYPLKQVKLGFISGLVPREKSIPFERILFRATRGNVFLKQAVVTHPVLDPLSGEKVHKNVFVVFYSGERVKNKILKICDAFGANRYPFSDDLGKQFQIITEVSGRLSELKTTIDVGLLHRSTLLQTIGYQFEHWSLLLKKEKSIYHTLNMLSINVTKKCLLAEGWSPVFATNQIQKVLQRATMDCNSQVGAIFHVLQTKEPPPTYFCTNKFTSSFQEIVDAYGVAKYQEVNPGVYTIITFPFLFAVMFGDWGHGICLLLATLYFIIREKKFSSQKLGDILEMTFGGRYVIMMMALFSIYTGLIYNEFFSIPFELFGPSAYGCRDPSCRDASTTGLIKVHSTYPFGVDPKWHGTRSELPFLNSLKMKMSILLGVSQMNLGIILSYYNAKYFGNDINIWYQFVPQMIFLNSLFGYLSLLIIVKWCTGSQADLYHLVLLLLALVAVPWMLLPKPFLLKKQHEERHRGQSYSLLYGGEDPLESESHGTPRDHEEFEFSEVFVHQLIHTIEFVLGAVSNTASYLRLWALSLAHSELSSVFYDKVLLLAWGFNNTIVLIVGIIVFICATVGVLLIMESLSAFLHALRLHWVEFQNKFYEGDGYKFIPFSFTTLTDEDEL. 828
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00492 827 Coils Coil 127 161 - -
Seca4g00492 827 PIRSF ATP6V0A1 43 646 IPR026028 GO:0000220|GO:0046961
Seca4g00492 827 PIRSF ATP6V0A1 640 827 IPR026028 GO:0000220|GO:0046961
Seca4g00492 827 Pfam V-type ATPase 116kDa subunit family 646 818 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g00492 827 Pfam V-type ATPase 116kDa subunit family 71 641 IPR002490 GO:0033179|GO:0046961|GO:1902600
Seca4g00492 827 PANTHER VACUOLAR PROTON ATPASES 47 825 IPR002490 GO:0033179|GO:0046961|GO:1902600
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00492 Seca-Chr4 8043622 8051824 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00492 45 826 Primary Pumps ATPases(2) AT4G39080 71.075 0.0 1205
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00492 K02154 - gmx:100805813 1329.31