Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00487 ATGGCTCGAGGAAAGATCCAGATCAAGAGGATAGAGAACACCACCAACCGCCAGGTCACTTACTCTAAACGACGGAATGGCCTTTTCAAAAAGGCCAACGAGCTCACCGTTCTCTGCGATGCCAAGGTTTCTATTATTATGTTCTCCAGCACTGGCAAGCTCCACGAGTACATTAGCCCCTCCACCTCAACAAAGCAGTTCTTCGATCAGTATCAGATGACTGTAGGAACTGATCTGTGGAACTCTCATTATGAGAATATGCAAGAGACCTTGAAGAAATTGAAAGAGGTGAATAGGAATCTTCGCAAGGAGATTAGGCAGAGGATGGGGGATTGTCTGAACGATCTGAGCATTGAAGACCTTAGGCTCCTTGAGGAAGAAATGGACAAGGCCGCCAAGGTTATTCGTGAGCGTAAGTATAAGGTGATAACCAATCAGATTGACACCCAGAGGAAGAAGGTAAGAGTGGTTCTTATTTAG 480 0.4562 MARGKIQIKRIENTTNRQVTYSKRRNGLFKKANELTVLCDAKVSIIMFSSTGKLHEYISPSTSTKQFFDQYQMTVGTDLWNSHYENMQETLKKLKEVNRNLRKEIRQRMGDCLNDLSIEDLRLLEEEMDKAAKVIRERKYKVITNQIDTQRKKVRVVLI. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00487 159 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 Coils Coil 84 111 - -
Seca4g00487 159 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 Gene3D - 13 86 IPR036879 GO:0003677|GO:0046983
Seca4g00487 159 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 CDD MADS_MEF2_like 2 80 IPR033896 GO:0000977|GO:0045944
Seca4g00487 159 ProSiteProfiles K-box domain profile. 84 159 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g00487 159 SUPERFAMILY SRF-like 3 96 IPR036879 GO:0003677|GO:0046983
Seca4g00487 159 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Seca4g00487 159 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 138 - -
Seca4g00487 159 Pfam K-box region 81 155 IPR002487 GO:0003700|GO:0005634|GO:0006355
Seca4g00487 159 FunFam MADS-box transcription factor 16 13 97 - -
Seca4g00487 159 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00487 Seca-Chr4 7913081 7917587 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00487 1 153 MADS-box Gene Family AT3G54340 67.320 8.84e-73 216
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Seca4g00487 DctP 0.00013 CL0177
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00487 K09264 - gmx:547720 294.278
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00487 4 7913081 7917587 Seca4g00487 4 7913081 7917587 ECH