Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00483 ATGAAGATCCAGTGCGACGTCTGTAACAAACATGAGGCTTCTTTATTCTGCACAGCCGACGAAGCTGCCTTATGTGACGGCTGCGACCACCGTGTCCACCACGCCAACAAACTCGCCTCCAAACACCAACGCTTCTCTCTCAACCACCCTTCTCCAAAGCATTTCCCTCTCTGCGATGTTTGCCGGGAGAGAAGAGCTTTTGTGTTTTGTGAACAAGATAGAGCGATTCTATGCAAAGAGTGTGACTTGCCAATTCATTCTGCCAACGATCTCACTAAGAAGCATAATAGGTTTCTTCTTACTGGGATTAAGCTCTCTGCTGCTGCTACTCTTTATTCTTCATCACCACCTACTTCTAATTCCAATTCAAAGTCTTGTGCTGATGATCATGACATTGACAACAATAATTCACTTCCACCTTTGATTGCTTCTCCTCCTTCAATATCAACGGTGGTGATGTCAGTGCCTCCGAATGAAAAAGAAGGTTTCACAAGTAGCAGCATATCCGAGTACTTGATAAACACTATTCCAGGCTGGCAGTTCGAAGATTTCCTCGATTCGCCTTCTCTTCCATTTGCTCTCTCTAAGAATAATGGTGATGGTATGTTGTCACAATTAGTGAATGGTGGTGATATTGAGAGAAATATGGTTTCGTTCTCGGCAGAGAGCATTGGTGGTACTGGGATCTGGGTTCCTCAAGCACCATATTCAACACAAATGATTGGGTACAGAGAAACAAAGGAAGCCACCAACAACAATATCATCAGATCAAGGTTGAGGGATGATAATTTCATAGTTCCACAGATGAGCCCTCCCAACACTACTACTGCCTCCAAGAGATCCAGACTTTTATGGGGCCATGAGAATGGATTGATGGATGTAAGACAACTAAAAACTAAACGGAGAAAAGGGTGA 915 0.4383 MKIQCDVCNKHEASLFCTADEAALCDGCDHRVHHANKLASKHQRFSLNHPSPKHFPLCDVCRERRAFVFCEQDRAILCKECDLPIHSANDLTKKHNRFLLTGIKLSAAATLYSSSPPTSNSNSKSCADDHDIDNNNSLPPLIASPPSISTVVMSVPPNEKEGFTSSSISEYLINTIPGWQFEDFLDSPSLPFALSKNNGDGMLSQLVNGGDIERNMVSFSAESIGGTGIWVPQAPYSTQMIGYRETKEATNNNIIRSRLRDDNFIVPQMSPPNTTTASKRSRLLWGHENGLMDVRQLKTKRRKG. 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00483 304 CDD Bbox1_BBX-like 5 47 - -
Seca4g00483 304 CDD Bbox1_BBX-like 57 100 - -
Seca4g00483 304 PANTHER B-BOX ZINC FINGER PROTEIN 22 1 274 - -
Seca4g00483 304 FunFam B-box zinc finger protein 21 1 98 - -
Seca4g00483 304 SMART bboxneu5 4 47 IPR000315 GO:0008270
Seca4g00483 304 SMART bboxneu5 53 100 IPR000315 GO:0008270
Seca4g00483 304 Gene3D Classic Zinc Finger 1 95 - -
Seca4g00483 304 ProSiteProfiles Zinc finger B-box type profile. 1 47 IPR000315 GO:0008270
Seca4g00483 304 Pfam B-box zinc finger 56 96 IPR000315 GO:0008270
Seca4g00483 304 ProSiteProfiles Zinc finger B-box type profile. 53 100 IPR000315 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00483 Seca-Chr4 7864924 7867358 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00483 1 285 C2C2-CO-like Transcription Factor Family AT1G75540 40.828 9.69e-69 215
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF DBB Seca4g00483 zf-B_box 4e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00483 - - gmx:100785978 333.569
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00483 4 7864924 7867358 Seca4g00483 4 7864924 7867358 ECH
Seca4g00483 4 7864924 7867358 Seca4g00483 4 7864924 7867358 PCT