Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00476 ATGGCAACAACGGCTATATTTCTCATCTCCATTGCAGTCGTTGCAAACTTCACCTTAACCTTAACATTTGCACATAGCAACAACAATGTGAGCCACTCAGAGATCCAAGCCTTAACAGCTTTCAAGCTCAACCTTCACGACCCTCTTGGTTCTTTAGATGGATGGGACCCTTCAACCCCTTCAGCACCCTGTGATTGGCGTGGCATTCTCTGTTTCAAAAACAGAGTTTATGAACTTCGCTTACCTCGTCTTCAACTCACTGGTCCACTCTCTCCTTCTCTCTCTAACCTCTCACAACTTCGCAAACTCAGTCTCCACTCTAACAACTTCAACTCCTCCATCCCTTCCTCTCTTTCCCATTGCTTGTTCCTCCGCGCCGTTTACCTTCACAACAACAAACTCTCCGGCAACCTTCCTCCGCCGCTTCTCAATCTCACCAACCTTCAGATTCTCAACCTCGCTCACAACCTTCTCTCCGGTACAATCCCTGGAAACATCTCAACCTCTCTCCGGTTCCTTGACTTGTCCTCAAACGCATTTTCCGGCGACATTCCGGCGAACTTCACCTCCAAATCTCAGCTTCAGCTCATCAACTTGTCCTACAACGGCTTCACCGGTGGAATACCTGTCACCATTGGAGCATTGCAACGTTTGGAGTATTTGTGGTTAGATTCCAACAATCTTCATGGAACGTTACCTTCAGCTCTTGCCAACTGTTCCTCACTGGTGCACCTCAGCGCAGAGGATAATGCCATCGGAGGTTTGATTCCGGCCACCATGGGGACCATGCCGAAGCTTCAAGTTCTGTCACTTTCGCTGAATCAACTTTCGGGTTCGGTCCCCACTTCTCTGTTTTGCAATGAACACACGAATTGGTCTCTGCGAATTGTTCAGCTTGGCTTTAATAAGCTCACGGGTATTACCAAGCCGCAAAGTGAGGAAAAATGTGTTAGCTTTTTGCAGATTTTGGACCTTAAGGAGAATCACATTATTCGTGCTTCGTTTCCCTCTTGGTTGACCAATGCGACGTCGTTGAGGGTTCTTGATCTTTCTGGAAACTCATTTTCAGGTGTTCTGCCTCCAGATATTGGGAATCTTTTCAGGTTAGAAGAATTGAGATTGTCGAATAATTCATTATCTGGTGGAGTCCCTATTAGTATTGTGAATTGTAGTGTGTTGCGGGTTCTTGATCTTCAGGGGAACAAGTTCTCTGGTCCTGTTCCTTCTTTTCTTGGTCAACTGAGAAGCCTCAAGGTGTTATCTCTTGGTGGTAACCTTTTTACTGGGTCAATACCCACCAGTTATGGGACACTTTATGAGCTAGAGACACTGAATTTGAGTAACAATAATCTAACAGGGATTTTGCCTGAGGAGATCATGCAATTAGGCAACATGAGTGCTTTGAATCTCAGCAATAACAGATTTTCTGGACAAGTTTCATCTCATATTGGGGACTTGATGGCTTTGCAAGTTCTTAATTTGAGTCACTGTGGGTTTTCAGGAAGGGTTCCTTCTACACTGGGTAATTTGATGAAACTTACAGTGTTGGATTTGAGCAAGCAAAACCTTTCAGGTGAATTGCCTGTTGAGCTTTTTGGATTACCAAGCTTGCAAGTTGTGGCACTTGAGGAAAACCATTTAAGTGGTGCTGTTCCTGAGGGTTTCAGCAGCATAGTTAGTCTAAGGTACCTCAATCTCACATCCAATGCCTTTGTTGGCAACATTCCAGCTACCTATGGGTTTCTTAGTTCCTTAATTGTTCTCTCTTTGTCTCACAATGGCATTTCTGGTGCAATACCTCCTCAGATTGGTGGTTGTTCTCAACTTGAAGTTCTCCAGCTACAGTCAAATCATTTGCAAGCTAACATTCCTAGTGAAATCTCTAGCCTTTCCCATTTAAAGGAGCTTAATTTGGGGCACAATAGGTTGAATGGTGATATCCCAGATGAAATATCACAATGTTCATCTTTGACTTCACTCTTATTGGATAGTAATCACTTGACAGGTCAAATACCAGAATCCTTGTCAAAATTATCAAACTTGACCGTGTTGAGTCTTTCTTCAAATCAATTAACCGGTGAAATTCCGGTAGATCTTTCACAAATTGCTGGTTTGAAGTATCTAAATCTATCCAATAACAATCTTGAGGGCGAGATTCCTGAGATGCTTGGTTCAAGATTCAATGACCCTTCTGTGTTTGCAATGAACCAGAGGCTATGTGGAAAACCTTTACATAGAGAATGTGCAAGTGTGAGAAGGAGAAAGAGGAGAAGGCTAATAATCTTTATTGGCGTGGCTGTAGCTGGACTATGCCTTTTGGCATTGTGTTGCTGTGGCTATGTTTACAGTCTCCTGAGATGGCGCAACAAACTCAGAGAAGGGGTGATGGGTGAGAAGAAACGTAGCCCTGCTAGTGCAGGCTCAGGAACAGACAGAAGTAGAGGCAGTGGTGAAAATGGAGGGCCAAAACTAGTAATGTTCAACAACAAGATCACTTATGCAGAGACATTAGAAGCAACCAGAAACTTTGATGAGGAAAACGTGTTGAGTAGGGGAAGGTATGGACTTGTGTTCAAAGCCTCCTACAATGATGGCATGGTTCTATCCATTCGTCGCCTCCCTGATGCATTCATGGATGAGGGTACTTTCCGCAAAGAAGCAGAATCACTAGGGAAAGTGAAGCATCGAAATTTAACAGTTCTGCGTGGCTATTATGCAGGACCACCACCTGATGTAAGGCTTCTTGTTTATGACTACATGCCAAATGGGAACCTAGGGACATTGCTTCAAGAAGCATCTCAACAAGATGGCCATGTTCTGAATTGGCCAATGCGTCATCTCATAGCACTAGGCATTGCTCGTGGGTTGGCTTTCTTACACTCAGTGCCAATAGTTCATGGTGATGTGAAGCCTCAAAATGTTCTCTTTGATGCAGATTTTGAAGCCCATCTGTCTGAATTTGGGTTGGATAGGTTGACAATGGGAAATCCAGCAGAAGCATCGTCTTCATCTACACCAGTTGGTTCCTTAGGGTATGTAGCACCAGAAGCTGCATTAACAGGACAAGCAACAAAAGAGGCAGATGTATACAGTTTTGGGATTGTGTTGTTGGAGATACTGACAGGGAGGAAACCAGTGATGTTCACACATGATGAGGATATAGTGAAGTGGGTGAAGAGGCAATTACAAAGGGGACAAATTTCAGAATTGTTGGAGCCTGGTTTGCTTGAGCTTGATCCAGAATCATCTGAATGGGAAGAGTTTTTGTTGGGTATCAAAGTTGCTCTATTATGCACAGCACCTGATCCTCTTGATCGACCATCTATCAATGACATTGTTTTCATGCTCGAAGGTTGTCGGGTCGGACCGGAGATACCATCCTCCGCTGATCCCACCACACTACCTTCCCCTACTTAA 3417 0.4413 MATTAIFLISIAVVANFTLTLTFAHSNNNVSHSEIQALTAFKLNLHDPLGSLDGWDPSTPSAPCDWRGILCFKNRVYELRLPRLQLTGPLSPSLSNLSQLRKLSLHSNNFNSSIPSSLSHCLFLRAVYLHNNKLSGNLPPPLLNLTNLQILNLAHNLLSGTIPGNISTSLRFLDLSSNAFSGDIPANFTSKSQLQLINLSYNGFTGGIPVTIGALQRLEYLWLDSNNLHGTLPSALANCSSLVHLSAEDNAIGGLIPATMGTMPKLQVLSLSLNQLSGSVPTSLFCNEHTNWSLRIVQLGFNKLTGITKPQSEEKCVSFLQILDLKENHIIRASFPSWLTNATSLRVLDLSGNSFSGVLPPDIGNLFRLEELRLSNNSLSGGVPISIVNCSVLRVLDLQGNKFSGPVPSFLGQLRSLKVLSLGGNLFTGSIPTSYGTLYELETLNLSNNNLTGILPEEIMQLGNMSALNLSNNRFSGQVSSHIGDLMALQVLNLSHCGFSGRVPSTLGNLMKLTVLDLSKQNLSGELPVELFGLPSLQVVALEENHLSGAVPEGFSSIVSLRYLNLTSNAFVGNIPATYGFLSSLIVLSLSHNGISGAIPPQIGGCSQLEVLQLQSNHLQANIPSEISSLSHLKELNLGHNRLNGDIPDEISQCSSLTSLLLDSNHLTGQIPESLSKLSNLTVLSLSSNQLTGEIPVDLSQIAGLKYLNLSNNNLEGEIPEMLGSRFNDPSVFAMNQRLCGKPLHRECASVRRRKRRRLIIFIGVAVAGLCLLALCCCGYVYSLLRWRNKLREGVMGEKKRSPASAGSGTDRSRGSGENGGPKLVMFNNKITYAETLEATRNFDEENVLSRGRYGLVFKASYNDGMVLSIRRLPDAFMDEGTFRKEAESLGKVKHRNLTVLRGYYAGPPPDVRLLVYDYMPNGNLGTLLQEASQQDGHVLNWPMRHLIALGIARGLAFLHSVPIVHGDVKPQNVLFDADFEAHLSEFGLDRLTMGNPAEASSSSTPVGSLGYVAPEAALTGQATKEADVYSFGIVLLEILTGRKPVMFTHDEDIVKWVKRQLQRGQISELLEPGLLELDPESSEWEEFLLGIKVALLCTAPDPLDRPSINDIVFMLEGCRVGPEIPSSADPTTLPSPT. 1139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00476 1138 ProSiteProfiles Leucine-rich repeat profile. 632 654 IPR001611 GO:0005515
Seca4g00476 1138 ProSiteProfiles Leucine-rich repeat profile. 440 461 IPR001611 GO:0005515
Seca4g00476 1138 SUPERFAMILY L domain-like 331 723 - -
Seca4g00476 1138 PRINTS Leucine-rich repeat signature 441 454 - -
Seca4g00476 1138 PRINTS Leucine-rich repeat signature 678 691 - -
Seca4g00476 1138 Gene3D Ribonuclease Inhibitor 164 309 IPR032675 -
Seca4g00476 1138 MobiDBLite consensus disorder prediction 798 823 - -
Seca4g00476 1138 Pfam Leucine rich repeat 656 715 IPR001611 GO:0005515
Seca4g00476 1138 Pfam Leucine rich repeat 320 379 IPR001611 GO:0005515
Seca4g00476 1138 Pfam Leucine rich repeat 415 475 IPR001611 GO:0005515
Seca4g00476 1138 Pfam Leucine rich repeat 512 570 IPR001611 GO:0005515
Seca4g00476 1138 Gene3D Ribonuclease Inhibitor 390 481 IPR032675 -
Seca4g00476 1138 FunFam LRR receptor-like serine/threonine-protein kinase GSO1 472 752 - -
Seca4g00476 1138 FunFam Piriformospora indica-insensitive protein 2 360 457 - -
Seca4g00476 1138 SUPERFAMILY L domain-like 32 330 - -
Seca4g00476 1138 FunFam Putative LRR receptor-like serine/threonine-protein kinase 807 919 - -
Seca4g00476 1138 Gene3D Transferase(Phosphotransferase) domain 1 920 1124 - -
Seca4g00476 1138 FunFam LRR receptor-like serine/threonine-protein kinase RPK2 920 1124 - -
Seca4g00476 1138 ProSiteProfiles Leucine-rich repeat profile. 704 726 IPR001611 GO:0005515
Seca4g00476 1138 Pfam Protein kinase domain 845 1112 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00476 1138 Gene3D Ribonuclease Inhibitor 482 756 IPR032675 -
Seca4g00476 1138 Gene3D Ribonuclease Inhibitor 310 389 IPR032675 -
Seca4g00476 1138 ProSitePatterns Serine/Threonine protein kinases active-site signature. 964 976 IPR008271 GO:0004672|GO:0006468
Seca4g00476 1138 SMART LRR_typ_2 97 121 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 678 702 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 145 169 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 343 366 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 534 557 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 414 437 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 582 606 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 630 654 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 462 486 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 438 461 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 263 287 IPR003591 -
Seca4g00476 1138 SMART LRR_typ_2 215 239 IPR003591 -
Seca4g00476 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 31 190 - -
Seca4g00476 1138 Pfam Leucine rich repeat N-terminal domain 33 71 IPR013210 -
Seca4g00476 1138 ProSiteProfiles Protein kinase domain profile. 843 1125 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00476 1138 Pfam Leucine Rich repeat 630 645 IPR001611 GO:0005515
Seca4g00476 1138 SUPERFAMILY Protein kinase-like (PK-like) 822 1127 IPR011009 -
Seca4g00476 1138 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 317 409 - -
Seca4g00476 1138 SMART serkin_6 843 1115 IPR000719 GO:0004672|GO:0005524|GO:0006468
Seca4g00476 1138 Gene3D Ribonuclease Inhibitor 33 142 IPR032675 -
Seca4g00476 1138 Gene3D Phosphorylase Kinase; domain 1 817 919 - -
Seca4g00476 1138 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 209 307 - -
Seca4g00476 1138 Pfam Leucine Rich Repeat 489 510 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00476 Seca-Chr4 7700369 7703785 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00476 1 1137 Receptor kinase-like Gene Family AT1G75640 65.704 0.0 1374
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-VII-3 Seca4g00476 Pkinase 2.6e-32 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00476 - - gmx:100801571 1712.58