Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00471 ATGAGGAATGTGGTTCAGGCTTTGTGGCTAGTCAGATATGAAGATGGTTCCATGCTTTGGTGGGATGTACGGAATCCTGGTGTTCCGGCTAGTTCTGTAAAATTCCATTCTGAGCCAGTTCTGAGCATCTGTATTGATGGGTCTTGCAAAGGGGGTATCTCTGGAGCTGCAGATGAGAAGATTGTAATGTACAGCTTGGATCATTCTTCGGGTACATGTGTGGTAAACAAAGAAATCAAATTGGAGCGACCAGGCATCTCAGGCACCTCAATTCGGCCTGATGGAAAAATTGCTGCAACTGCTGGATGGGACCACAGAGTAAGGGTATATAATTACCGCAAAGGAAATGCTTTAGCTATACTAAAGTATCATCATGCCACGTGCAATGCTGTAACTTTTTCGTCCAATTGTAAGCTTATGGCCACTGCGTCGGAAGACACAATGGTGGCGCTATGGGAATTGTATCCTCCTCAAATATGA 480 0.4479 MRNVVQALWLVRYEDGSMLWWDVRNPGVPASSVKFHSEPVLSICIDGSCKGGISGAADEKIVMYSLDHSSGTCVVNKEIKLERPGISGTSIRPDGKIAATAGWDHRVRVYNYRKGNALAILKYHHATCNAVTFSSNCKLMATASEDTMVALWELYPPQI. 160
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00471 159 ProSiteProfiles Trp-Asp (WD) repeats profile. 121 159 IPR001680 GO:0005515
Seca4g00471 159 PANTHER TRANSDUCIN BETA-LIKE 3 10 154 - -
Seca4g00471 159 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 121 159 - -
Seca4g00471 159 ProSitePatterns Trp-Asp (WD) repeats signature. 140 154 IPR019775 -
Seca4g00471 159 Gene3D - 10 158 IPR015943 GO:0005515
Seca4g00471 159 SMART WD40_4 114 153 IPR001680 GO:0005515
Seca4g00471 159 SMART WD40_4 72 111 IPR001680 GO:0005515
Seca4g00471 159 SMART WD40_4 26 65 IPR001680 GO:0005515
Seca4g00471 159 SUPERFAMILY WD40 repeat-like 13 154 IPR036322 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00471 Seca-Chr4 7637717 7640616 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00471 8 154 U-box Gene Family AT2G33340 27.152 3.54e-08 49.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00471 K24770 - gmx:100800482 284.263