Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00470 ATGCAAGTAACAAGCTTCCTGCAGCTATCTGTTCTTTCAACCATTATTTCATATCCAGCCCAATTGGACCTACCCAAGAAACAAGCCACTGCTAAGAATGCCTACAGTTTACCTTTTCTTGTACAGACCAATGAAGCTGGCGTTGAGAACAATCTTTACCCGTTTGTTTTCCTCAACGTCGATGGCAACCTCTTCATCTTCGCCAATAACCGCGCTATCTTATTCGACTACAATAACAACAATGTTGTCAAGACATACCCTTCCATACCAGGTGGAGATCCCAGAAGCTACCCAAGCACAGGTTCCGCGGTTTTGCTTCCTCTAAGGAATTTAAAAGCGCCTTCTGTGGAAGCTGAGGTCTTGGTTTGCGGTGGAGCCCCGAAAGGGTCTTTTCAGCAGGCCATACAGGGTCGATTTGTCGGTGCCTTGAAAACCTGCGGTCGGATCAAAATAACCGACCCGAGCCCGCAGTGGGCCATGGAGACCATGCCCGGTGGTAGAACCATGGGGGACATGGTCATACTCCCTAACGGCAACGTTTTAATTATAAATGGAGCAGCTGCAGGGACCGCTGGGTGGGAATTGGGCCGAAACCCGGTGTTGAGCCCGTTTCTTTATAAACCCGATGGGCCGGTTGGGTCTCGGTTCGAGCTACAAAGCGCGTCAAGTATTCCCAGGATGTATCATTCCACTGCCGTTTTACTTCGAGATGGGAGGGTCCTTGTTGCGGGGAGCAATCCTCACATATATTACAATTTCACGAATGTGTTGTTCCCAACGGAACTGAGTTTGGAAGCGTTTTCTCCTTCGTATCTAGAGCCTGGATTCTCTGGTTTGCGTCCCACGATAGTGTATCCTGCTCCCCAGCCCCAAACCAAACTCATGTACGCTCAGAGGTTGAAGCTTCGATTCCACGTCACAGCACCGTTAGATAAAAAATCGGTGTTGGTGACAATGCTGGCGCCACCTTTTAACACGCACTCCTTCTCCATGAATCAGAGGCTGTTGGTGCTGGAACCCAACAATTTGATTAACATTGGAGTATCAACGTATGAAGTTGAGGTGTCGACACCCGGTTCGGCTATTCTTGCACCACCCGGGTTCTATCTTCTGTTTGTGGTTCACCAGGAAATTCCAAGCGAGGGTATTTGGGTCCAAATACTCTGA 1167 0.4901 MQVTSFLQLSVLSTIISYPAQLDLPKKQATAKNAYSLPFLVQTNEAGVENNLYPFVFLNVDGNLFIFANNRAILFDYNNNNVVKTYPSIPGGDPRSYPSTGSAVLLPLRNLKAPSVEAEVLVCGGAPKGSFQQAIQGRFVGALKTCGRIKITDPSPQWAMETMPGGRTMGDMVILPNGNVLIINGAAAGTAGWELGRNPVLSPFLYKPDGPVGSRFELQSASSIPRMYHSTAVLLRDGRVLVAGSNPHIYYNFTNVLFPTELSLEAFSPSYLEPGFSGLRPTIVYPAPQPQTKLMYAQRLKLRFHVTAPLDKKSVLVTMLAPPFNTHSFSMNQRLLVLEPNNLINIGVSTYEVEVSTPGSAILAPPGFYLLFVVHQEIPSEGIWVQIL. 389
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00470 388 SUPERFAMILY Galactose oxidase, central domain 51 273 IPR011043 -
Seca4g00470 388 PANTHER SECRETED PROTEIN-RELATED 25 387 - -
Seca4g00470 388 Pfam Glyoxal oxidase N-terminus 24 125 IPR009880 -
Seca4g00470 388 Gene3D Immunoglobulins 280 388 IPR013783 -
Seca4g00470 388 Pfam Galactose oxidase-like, Early set domain 280 387 IPR015202 -
Seca4g00470 388 Gene3D - 18 275 IPR037293 -
Seca4g00470 388 SUPERFAMILY E set domains 277 387 IPR014756 -
Seca4g00470 388 CDD E_set_GO_C 275 387 IPR015202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00470 Seca-Chr4 7603311 7604607 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00470 - - gmx:100816842 577.015
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00466 4 7531300 7532925 Seca4g00470 4 7603311 7604607 PCT