Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00467 ATGGGACCAGGTGGATTAGGGGATATTCAATACCCACATGACCCAGAAGAAGTGCTTGGAGTGCCAGGAGGTATTTTGTGGACAACTCTAGTGTCAAGGAGACAACTTAGCGGAAGACATGGATTGGTTCTACCGGTGAGGATTGTAAATGGATACCTGGTGCAAGACCAAAGAGAAATTCAAATCAAGATTCCTAATGGTCAGATCCAGTCCTTGGAGCTTGTTTGGAACACACAAATACGCAATCACTGCAGGATAGGTCAGGGTTGGTACCAATATTGCAGGGCTGAGGAACTTCAGGAAGGAGATGAACTCATGTTTTGGTTGTTGGATGGTGAAGGATTTATTAGACTAGTATCGAGACGCCATAGGGATTAG 378 0.4497 MGPGGLGDIQYPHDPEEVLGVPGGILWTTLVSRRQLSGRHGLVLPVRIVNGYLVQDQREIQIKIPNGQIQSLELVWNTQIRNHCRIGQGWYQYCRAEELQEGDELMFWLLDGEGFIRLVSRRHRD. 126
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00467 125 SUPERFAMILY DNA-binding pseudobarrel domain 28 122 IPR015300 -
Seca4g00467 125 ProSiteProfiles B3 DNA-binding domain profile. 27 124 IPR003340 GO:0003677
Seca4g00467 125 Gene3D - 26 122 IPR015300 -
Seca4g00467 125 CDD B3_DNA 36 114 IPR003340 GO:0003677
Seca4g00467 125 Pfam B3 DNA binding domain 35 116 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00467 Seca-Chr4 7576487 7577444 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g00467 B3 8.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00467 - K14686 lja:Lj1g3v3386930.3 55.8398