Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00466 ATGACTACTCTTTACCTTTTCCTCCTTCTCATTCTCCTTGCCTCGGCGGAATCCGCCAACGGACAGTGGCAGCTCCTGCAAAAAAGCATCGGCATTGTAGCCATGCACATGCAGTTAATGCACAACGACCGTGTCGTCATTTACGACCGCACTGACTTTGGCTTATCCAACTTAACCTTACCCGACGGTAGATGCCGCCACGATCCCAACGAGAGGATTGTTAAAACAGACTGCACCGCTCACTCCGTCGAATACGACGTCGCATCCAATACATTTCGCCCACTGTTCGTTCAAACAGATGTGTGGTGCTCATCCGGTTCGGTCGTTCCCAACGGTTCATTGGTTCAGACTGGCGGTTATAACGATGGACAAACAACGGCCAGGATCTTCAACCCATGCCCAAACTGTGACTGGCAAGAAATCAACGGTAGCCTCGTCGTTCAAAGATGGTATTCCACCAATCATATCTTGCCAGATGGACGGCAGATTGTAATTGGAGGCAGAAGGCAATTCAACTACGAGTTTGTCCCAAAGAATGAAGCCACCGCTAAGAATGTCTACAATTTACCTTTCCTTGTACAGACCAATGATCCTGGCGAGGAGAACAACCTTTACCCGTTTGTTTTCCTTAACGTGGATGGCAACCTCTTCATCTTCGCTAACAATCGCGCCATCTTATTCAATTACAACAATAACAGTGTTGTGAGGACATACCCTTCCATACCAGGTGGAGATCCCAGGTGTTATCCTAGTACAGGTTCCGCGGTTTTGCTGCCTTTAAGGAATTTACAAGCACCTTCTCTGGAAGCTGAGGTGTTGGTTTGTGGTGGAGCACCGACAGGGTCTTACCGGAAGGTCATCCATGGTGAGTTTATCGGAGCCTTGAAAACTTGCGCTCGGATCAAAATAACCGACCCGAACCCACAGTGGGCCATGGAGACCATGCCAAGTGGTAGAACCATGGGTGACATGATCATACTCCCAAACGGCAACGTTTTGATCATAAACGGAGCGGCAGCGGGAACTGGCGGGTGGGAAACGGCTCGAAACCCGGTGTTGAGCCCGTTTCTTTATAAACCGAATGGGCCGGTTGGGTCTCGGTTTGGGCTGCAAAGCCCGTCCAGCATCCCCAGGATGTATCATTCCACTGCTGTTTTACTTCGAGATGGGAGGGTCCTTGTTGGTGGGAGTAATCCTAATGTGTATTACAAATTCACGAATGTGTCTTTCCCAACGGAACTGAGGATGGAAGCGTTTTCTCCTTCGTATCTGGAGCCTGGATTCTCTAATGTGCGTCCCACAATAGTGTCTCCTGCTCCCCAATCCCAAACCCAAATCAAGTACGCTCAGAGGTTGAAGCTTCAATTCAAGGTGGCAGCAGCATTAGATAAAAAATCGGTGTTGGTGACAATGCTGGCGCCACCTTTTAACACGCACTCCTTCTCCATGAATCAGAGGCTATTGGTGCTGGAACCCAACAATTTGAGTAACATTGGGGTATCAAGGTATGAAGTTGAGGTGACCACACCCGGTTCAGCTATCCTTGCACCACCTGGGTTCTATATACTGTTCGTGGTCCACCAGGAAATTCCAAGCCAGGGTATTTGGGTCCAAATAAGCTCTTAA 1626 0.4902 MTTLYLFLLLILLASAESANGQWQLLQKSIGIVAMHMQLMHNDRVVIYDRTDFGLSNLTLPDGRCRHDPNERIVKTDCTAHSVEYDVASNTFRPLFVQTDVWCSSGSVVPNGSLVQTGGYNDGQTTARIFNPCPNCDWQEINGSLVVQRWYSTNHILPDGRQIVIGGRRQFNYEFVPKNEATAKNVYNLPFLVQTNDPGEENNLYPFVFLNVDGNLFIFANNRAILFNYNNNSVVRTYPSIPGGDPRCYPSTGSAVLLPLRNLQAPSLEAEVLVCGGAPTGSYRKVIHGEFIGALKTCARIKITDPNPQWAMETMPSGRTMGDMIILPNGNVLIINGAAAGTGGWETARNPVLSPFLYKPNGPVGSRFGLQSPSSIPRMYHSTAVLLRDGRVLVGGSNPNVYYKFTNVSFPTELRMEAFSPSYLEPGFSNVRPTIVSPAPQSQTQIKYAQRLKLQFKVAAALDKKSVLVTMLAPPFNTHSFSMNQRLLVLEPNNLSNIGVSRYEVEVTTPGSAILAPPGFYILFVVHQEIPSQGIWVQISS. 542
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00466 541 CDD E_set_GO_C 427 539 IPR015202 -
Seca4g00466 541 Gene3D - 17 427 IPR037293 -
Seca4g00466 541 PANTHER SECRETED PROTEIN-RELATED 8 540 - -
Seca4g00466 541 SUPERFAMILY Galactose oxidase, central domain 68 425 IPR011043 -
Seca4g00466 541 SUPERFAMILY E set domains 428 540 IPR014756 -
Seca4g00466 541 FunFam Aldehyde oxidase GLOX 17 430 - -
Seca4g00466 541 Pfam Glyoxal oxidase N-terminus 35 277 IPR009880 -
Seca4g00466 541 Gene3D Immunoglobulins 431 541 IPR013783 -
Seca4g00466 541 Pfam Galactose oxidase-like, Early set domain 432 539 IPR015202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00466 Seca-Chr4 7531300 7532925 Dispersed/Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00466 - - gmx:100816842 825.854
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00466 4 7531300 7532925 Seca4g00466 4 7531300 7532925 ECH
Seca4g00466 4 7531300 7532925 Seca4g00470 4 7603311 7604607 PCT
Seca4g00466 4 7531300 7532925 Seca4g00466 4 7531300 7532925 PCT