Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00461 ATGGGGAAATCTACCTCCTGCTTCAGACTAATCACATGTGGCGGCGATTCGGCGGAGAATGATGATTTCCAAGTATCTGAGATCAAGGATTCTAATGATAAACGTGGTTGGAGTTTCCGGAAGAAATCTGCAAGGCACCGTGTGCTTAGCAATACTGTCATAGCCGAGGCCCCATCTTCTGCTAATAATAAGGAGAGTTCAGAATGTGCTAATTTTAATTTTCAACCACTTCTTGAACCTAATGTTGTCGAGAAGATTTGCACAACAAATTTCTCTAATGAGAAGCCTCAGTTATCCTCCTTTGAAAGCTCACAAATGTCAGAAAGTAATGTCATTGAGACTGAGAGCAAGGTGGATGTGGATCCACCAGAGTCCGCTGTTATCATCATCCAGGCTGCAATCAGAGGGTTAATGGCTCAGAGAGAACTACTACAGCTTAAGAATGTAGTGAAATTGCAAGCTGCTGTTCGTGGGCACTTGGTCAGGAGGCATGCTGTAGGAACCTTACGTTGTGTTCAAGCCATTGCGAAAATGCAGGTCCTTGTGCGAGCTCGTCGTGCTCAGCAGTCACATCTGGAAAATCATTTATATCACAAGGATGGAAATGATTCCTCAAAAGCTTTGGGGAATGAAAATCACATGACCAAACCAAATATGATGTACACTTCAACTGAGAAGCTGCTTAGCAATAGGTTTGCTCGTCAGCTGTTGGAATCATCACCAAAGAACAAACCTATCCATGTCAAGTGTGATCCTTCTAAAGCTGATTCTGCATGGAAATGGTTGGAGAGGTGGATGTCTGTAACATCAAAAGATGTTGCCGAGTTAAAAAAAACTAATTCTTTGACAGATCAATCAGACAAAAGCAAAGACAGCACTTCTATTTGTCAATTAGAAACAGGTATTCCGCCTGAAGTCTTTCTCCAGTCAGCTGACTCAAAGCCCACTGTTGAGGATTCACCTCTGCTTTCTGAGGATGAAGAGAAGGTGATTACTTATGATGCCAGTAACTTAAAGTTGCATCCAAGCTGTCCCACATCATCTATTGTAAAAGAGGACGTGGAGCAGGTTCCTCCTGAAGAAATCATTGCATATGATGCTAAGGTAGCCTCAGCAGAAACTGATTCCTTCCAAAATGAAATATCAGCATCAGATGCAAGTGCACCAGAGCTTAATATTAATTCTCTTCATCAGAAGCCTGAAATTGATGATGACCAGCAAAAAAGATCTTTGAAAAGATTTGCCTCAGACCAACTAGAGGCCGAAGGAAAGAAACCTGTAAATGGATCAAGAAAGGTCAGTAATCCTGCATTTATTGCTGCACAGTCAAAATTTGAAGAGCTGAGTTCAATGGCTAATTCAGGTAGGACAAGCAGTGTGTCCTATCAAGACGCAGCAGTTGAATCACAAGGAGATACCTCTTTAGTCGGCACAGATACTGCATATAGATCAAAAGAGTTATCATCTGAAAATTCTGCTCCCTTTCTTTCAAGAGTTGGTGGTTCTGAATGTGGTACTGAACTCTCCATCTCTTCCACTCTTGATTCACCTGACGTATCAGAGGTTGGTGCTACGGAAAATGAGCAGCAGGATGCCAAAGATTTAGTAGAAGGGACTGGTAATCTTGAAAACAGGATAAACCATGATGATGAGGCCAATGTTCCATGTACCATTCCAGCCTCTAACTTAGCTACCTCTGTTTTGGATCAGTCAGAGATTGTTGATAACATCAATGGAAATATGGTTCACTCAGTGGTAGCTGTCAACTCTGAAGAGCCTACTACTAAGACTGAGATAAATACATCTGACCAGGAGAAAGAGCAGGCAGAGGCTATTGTTGTGCAAGGTTCCAGATCATCTCCAGAAGCTTCACCTAGAAGTCATATAACTGTCCCTGAATCACAAGGAACACCTTCGAGTCAGGTATCTATAAAACCTAAAAAGGGCAAAATCAACAAGACAGGATCCAACAATAAACACGGTACCCTCTCAGTGGGAAACAAATCACCTGCAAATGCAAATGATGATTCAGGTTCGAGAGGCAGTAGGGAGCAACTGCCTAAAGATCAGCGGAGTGGGAAGAGACGCAATTCCTTTGGCTTAGTAAAACCTGATCACATTGATCAAGAACCTAGAGATAGTAGTAGTAACAATAATTCTCTTCCCCATTTCATGCAAGCTACAGAATCTGCTAGGGCAAAGGTCAATGCTAATAACTCTCCTAGATCAAGTCCAGATGTGCATGAACGAGACATCCAAGTTAAGAAGAGACATTCCTTACCTGGTGCCACTGGTAGGCAGGTTTCTCCACGCATCCAACGATCAATGTCTCAGGCACAGCAGAGTGCAAAGGGAAACAGTGTACATCCTCCTCAAGAGAGAAAATGGCTGAGGTGA 2397 0.4264 MGKSTSCFRLITCGGDSAENDDFQVSEIKDSNDKRGWSFRKKSARHRVLSNTVIAEAPSSANNKESSECANFNFQPLLEPNVVEKICTTNFSNEKPQLSSFESSQMSESNVIETESKVDVDPPESAVIIIQAAIRGLMAQRELLQLKNVVKLQAAVRGHLVRRHAVGTLRCVQAIAKMQVLVRARRAQQSHLENHLYHKDGNDSSKALGNENHMTKPNMMYTSTEKLLSNRFARQLLESSPKNKPIHVKCDPSKADSAWKWLERWMSVTSKDVAELKKTNSLTDQSDKSKDSTSICQLETGIPPEVFLQSADSKPTVEDSPLLSEDEEKVITYDASNLKLHPSCPTSSIVKEDVEQVPPEEIIAYDAKVASAETDSFQNEISASDASAPELNINSLHQKPEIDDDQQKRSLKRFASDQLEAEGKKPVNGSRKVSNPAFIAAQSKFEELSSMANSGRTSSVSYQDAAVESQGDTSLVGTDTAYRSKELSSENSAPFLSRVGGSECGTELSISSTLDSPDVSEVGATENEQQDAKDLVEGTGNLENRINHDDEANVPCTIPASNLATSVLDQSEIVDNINGNMVHSVVAVNSEEPTTKTEINTSDQEKEQAEAIVVQGSRSSPEASPRSHITVPESQGTPSSQVSIKPKKGKINKTGSNNKHGTLSVGNKSPANANDDSGSRGSREQLPKDQRSGKRRNSFGLVKPDHIDQEPRDSSSNNNSLPHFMQATESARAKVNANNSPRSSPDVHERDIQVKKRHSLPGATGRQVSPRIQRSMSQAQQSAKGNSVHPPQERKWLR. 799
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00461 798 MobiDBLite consensus disorder prediction 506 526 - -
Seca4g00461 798 MobiDBLite consensus disorder prediction 681 712 - -
Seca4g00461 798 PANTHER IQ-DOMAIN 5-RELATED 1 768 - -
Seca4g00461 798 MobiDBLite consensus disorder prediction 766 788 - -
Seca4g00461 798 MobiDBLite consensus disorder prediction 589 798 - -
Seca4g00461 798 Pfam IQ calmodulin-binding motif 147 164 IPR000048 GO:0005515
Seca4g00461 798 Pfam IQ calmodulin-binding motif 125 143 IPR000048 GO:0005515
Seca4g00461 798 ProSiteProfiles IQ motif profile. 124 151 IPR000048 GO:0005515
Seca4g00461 798 MobiDBLite consensus disorder prediction 613 680 - -
Seca4g00461 798 ProSiteProfiles IQ motif profile. 145 174 IPR000048 GO:0005515
Seca4g00461 798 MobiDBLite consensus disorder prediction 713 743 - -
Seca4g00461 798 SMART iq_5 145 166 IPR000048 GO:0005515
Seca4g00461 798 SMART iq_5 122 144 IPR000048 GO:0005515
Seca4g00461 798 Gene3D - 121 171 - -
Seca4g00461 798 MobiDBLite consensus disorder prediction 506 530 - -
Seca4g00461 798 Pfam Protein of unknown function (DUF4005) 704 781 IPR025064 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00461 Seca-Chr4 7420820 7428025 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00461 113 798 IQD Protein Family AT1G19870 39.112 8.32e-117 365
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00461 - - gmx:100799424 1167.53