Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00454 ATGCACATTGGTGTGCTTGCTGCCGCAGCTCATGCTGCTGCTAATCGAAGTCCATTCAATATTTTCTACAATCCAAGAGCATGCCCTTCAGCATTTGTTATTCCACTAGCTAAATACCGAAAAGCTGTATATGAGACACAGCTCTCAGTTGGCTTGAGATTTGGTATGATGTTTGAGACAGAGGAATCAGGTAAGCGCAGATATATGGGTACAATTATAAGCATAAGTGATTTGGATCCTCTAAGGTGGCCTGGTTCTAAGTGGAGAAATATTCAGGTGGAGTGGGATGAGCCAGGGTGTAGTGATAAGCAGAATAGAGTTAGTTCATGGGACATTGAGACTCCTGAAAGTCTTTTCATCTTCCAGTCTTTGACTTCAAGTCTTAAACGGCCATTGCAATCTGGATTATTGGGTGCAGAAAACGAGTGGAACACTTTGTCAAGAAGACCTTTTATGCGAGTTCCTGAAAATGGAATTGTGGAGCTCACAAACACCATGCCAAATCTGTACTCAGAACAAATGTCGAAGCTTCTTTTTAAACCCCAACTTGTTAACAATGCTGGAAACTCTTTATGGGTCAGACAACAAGAATCTTCTGCTAAGAGAGGTCCCTTAGAAGAGGTGAATACCACACTGCCAATAGGTTATCAACAAGCTCATCTTGCAAGTTCAGTGAGCTTACCACAACCAAATCCACATTTTCAATCTGAACCAGACCAATCTAATACCTTGAACTTGCATCCACATTTGAAAAGTGATCAACTTGAAAAATTGTATCCTCCGGCTAAAATTGATAATCCTTTGTCTTCTGGAACAGTTACTGATAAGCCAAAATTAGAATCTGAGGTGTCTAGTGATGGTATATTTGACTACCCTTCCTTGGAAGGCTGCAACATTGAAAAAATGGCATTAAATCTTGTTAGCCCCCAAAGCCTTACAGACCAATTGACATTCCTTAATCAAAACCAGAGTCCATTGGTGGGTGATATTCCTCATTTAGACATTGATGAATGGATGATGTATTCTTCTTGGCAAACTCTTGTTGGGCAAAATGGATCAACTGGACCTCTAGCAGCTTTGCAAGAACAATCTGTGCTTCCCTCCCAAGCAGCTAATCTCCCTTTACCTTCTGTAAGCCAAGACATGTGGGGTCCTGCGAAAAATTTGAAGCTTTTACCTCAATCAGATCAGCTAACTTCCATCTCTCAGCAGCATAGCCTTAGTTGTATATCTACTAGTTCAAACAATTTGAGGGATCTATCAGCTGAGAGCAACAATCAAAGTGAAATTTACAACAGCTTCAATAATGTTGATGGTAATAAAAGTGTAAGTGCTACAATGGGTAATCCTTCTACTTCAAGTGCTATTTTGGATGAGTTTTGCAATTTCAAGGAAAGGAACTTCAAGAACCCATCAGATTGCATGCTGAGCAACTTAAGTACAAGCCAAGATGTCCAGTCTCAGATAACATCCACAAGTTTAGTAGAGTCACATGCCTTTTCAGTGCAGGAAATTCCTGACAACTCAGTTGGTGCATCTTCAAGCCATGTTGATTTTGATGAAAGCAGCATTCTGCAGAATAATTCATGGCCGCAAGTAGCTGCGCAGCCTGCACGTAGGCGTACCTACACAAAGGTGCAAAGGGCAGGTTCTGTAGGAAGATCAATTGATGTGACAACTTTCAAGAACTATGAGGAACTGATCCGAGCAATCGAATGCATGTTTGGACTGGAGGGTTTGCTGAATGACACTAGAGGTTCAGGATGGAAATTGGTGTATGTGGATTATGAGAATGATGTTCTGCTTGTGGGGGATGATCCTTGGGAGGAATTTGTGGGTTGCGTACGGTGCATCAGGATTTTGTCACCAACAGAAGTTCAGCAGATGAGTGAAGAGGGGATGAAGCTTCTAAATAGTGGTGCTTTTCAAGGGATCAATGGTTGCATGTCTGGTGGCTCTAGTTGA 1965 0.4168 MHIGVLAAAAHAAANRSPFNIFYNPRACPSAFVIPLAKYRKAVYETQLSVGLRFGMMFETEESGKRRYMGTIISISDLDPLRWPGSKWRNIQVEWDEPGCSDKQNRVSSWDIETPESLFIFQSLTSSLKRPLQSGLLGAENEWNTLSRRPFMRVPENGIVELTNTMPNLYSEQMSKLLFKPQLVNNAGNSLWVRQQESSAKRGPLEEVNTTLPIGYQQAHLASSVSLPQPNPHFQSEPDQSNTLNLHPHLKSDQLEKLYPPAKIDNPLSSGTVTDKPKLESEVSSDGIFDYPSLEGCNIEKMALNLVSPQSLTDQLTFLNQNQSPLVGDIPHLDIDEWMMYSSWQTLVGQNGSTGPLAALQEQSVLPSQAANLPLPSVSQDMWGPAKNLKLLPQSDQLTSISQQHSLSCISTSSNNLRDLSAESNNQSEIYNSFNNVDGNKSVSATMGNPSTSSAILDEFCNFKERNFKNPSDCMLSNLSTSQDVQSQITSTSLVESHAFSVQEIPDNSVGASSSHVDFDESSILQNNSWPQVAAQPARRRTYTKVQRAGSVGRSIDVTTFKNYEELIRAIECMFGLEGLLNDTRGSGWKLVYVDYENDVLLVGDDPWEEFVGCVRCIRILSPTEVQQMSEEGMKLLNSGAFQGINGCMSGGSS. 655
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00454 654 Gene3D - 537 630 - -
Seca4g00454 654 MobiDBLite consensus disorder prediction 261 284 - -
Seca4g00454 654 Pfam Auxin response factor 9 92 IPR010525 GO:0003677|GO:0005634|GO:0006355|GO:0009725
Seca4g00454 654 ProSiteProfiles PB1 domain profile. 541 625 IPR000270 GO:0005515
Seca4g00454 654 FunFam Auxin response factor 536 630 - -
Seca4g00454 654 FunFam Auxin response factor 47 119 - -
Seca4g00454 654 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 1 631 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g00454 654 MobiDBLite consensus disorder prediction 225 246 - -
Seca4g00454 654 Gene3D - 47 120 - -
Seca4g00454 654 Pfam AUX/IAA family 534 627 IPR033389 -
Seca4g00454 654 SUPERFAMILY CAD & PB1 domains 554 620 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00454 Seca-Chr4 7372391 7375458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00454 1 646 B3 DNA Binding Superfamily AT1G19850 48.876 1.34e-178 529
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00454 K14486 - gmx:100790289 872.078