Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00453 ATGTTTACTAATTCAGGGGTCCCAAAGAGTTTGAATTCGGAGTTATGGCATGCTTGCGCAGGCCCTCTTGTATCCTTGCCTCAGGTGGGAAGTCTTGCTTATTACTTCCCTCAGGGACATAGCGAGCAGGTGGCTGCTTCCACTAGAAGTACAGCGACCTCACAGATTCCTAACTATCCCAATCTTCCATCTCAGTTACTCTGCCAAGTCCAATATGTCACACTTCATGCAGACAAAGAAACAGACGAAATCTATGCTCAAATGTGCCTTCAACCACTGGATTCCGTAAGCGAAAAAGACATCTTTCCCATATCTGAGTTTGGGCTAAAACCCAGCAAGCATCCCAGTGAGTATTTCTGCAAGACTTTAACTGCTAGTGACACGAGCACACATGGTGGCTTTTCTGTACCACGCAGGGCAGCAGAAAAGCTCTTTCCTCCATTGGATTACACGACTCAACCACCAACCCAGGAACTTGTTGTCAGAGATTTGCATGATAATACCTGGACATTTCGACATATATACCGTGGAGAAAGGAGGGTAAACTTTTTCTTTTTGAATTTAGTGGGTTACATGATATTTAGAAAAATGAACAAGAAATAG 603 0.4378 MFTNSGVPKSLNSELWHACAGPLVSLPQVGSLAYYFPQGHSEQVAASTRSTATSQIPNYPNLPSQLLCQVQYVTLHADKETDEIYAQMCLQPLDSVSEKDIFPISEFGLKPSKHPSEYFCKTLTASDTSTHGGFSVPRRAAEKLFPPLDYTTQPPTQELVVRDLHDNTWTFRHIYRGERRVNFFFLNLVGYMIFRKMNKK. 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00453 200 SUPERFAMILY DNA-binding pseudobarrel domain 108 180 IPR015300 -
Seca4g00453 200 Pfam B3 DNA binding domain 119 182 IPR003340 GO:0003677
Seca4g00453 200 CDD B3_DNA 118 184 IPR003340 GO:0003677
Seca4g00453 200 PANTHER AUXIN RESPONSE FACTOR 4-RELATED 9 180 IPR044835 GO:0003677|GO:0006355|GO:0009725
Seca4g00453 200 Gene3D - 117 197 IPR015300 -
Seca4g00453 200 SMART B3_2 119 197 IPR003340 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00453 Seca-Chr4 7370530 7371920 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00453 11 194 B3 DNA Binding Superfamily AT1G19850 74.595 3.62e-96 296
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF B3 Seca4g00453 B3 2.5e-08 CL0405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00453 K14486 - gmx:100813003 323.553