Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00449 ATGTCTGGGAGACTCGGAAAATGCAGCAGAATCCGCCACATCGTGAGGCTCCGGCAAATGCTGCGGCGGTGGCGGAACAAGGCCCGCATGTCAGCACATCGAACACCGCCTGATGTTCCTGCGGGACACGTGGCGGTGTGCGTGGGCACCAACTACAAGAGATTTGTGGTGCGCGCAACCTACCTGAACCACCCCATCTTCGAGAAGCTACTGGTTCAGGCAGAGGAAGAGTACGGGTTCTCAAACAATGGTCCCCTCGCCATTCCCTGCGACGAACTGCTCTTCGAAGAGATCATCCGGTTTATTTCACGGTCCGGTTCGTCTGGCAACTCGACCCGGTTCGAGGACTTTCAAAGGTACTGCCACGCTGGCATCAAGAATAACAACATGGACTTATACCCTGAGTCTCGACCGCTACTCACTCACAAATAA 432 0.5509 MSGRLGKCSRIRHIVRLRQMLRRWRNKARMSAHRTPPDVPAGHVAVCVGTNYKRFVVRATYLNHPIFEKLLVQAEEEYGFSNNGPLAIPCDELLFEEIIRFISRSGSSGNSTRFEDFQRYCHAGIKNNNMDLYPESRPLLTHK. 144
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00449 143 Pfam Auxin responsive protein 16 101 IPR003676 GO:0009733
Seca4g00449 143 PANTHER AUXIN-INDUCED PROTEIN-LIKE-RELATED 27 98 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00449 Seca-Chr4 7318490 7318921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00449 5 140 Calmodulin-binding Proteins AT4G34750 53.103 4.81e-48 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00449 K14488 - qsu:112012151 217.624
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00449 4 7318490 7318921 Seca4g00449 4 7318490 7318921 ECH
Seca4g00449 4 7318490 7318921 Seca4g00449 4 7318490 7318921 PCT