Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00445 ATGGACCGACGCTGGCCTTGGAAGAAAAAATCATCTGACAAAACTGTGGTTGAGAAAGCAGCTGTTGCATTGGATTCCTCCGATGCTTCCAATCAGGGCAATCAGAAACAGGATAACAACAAGAAACCAAACTATGTCCAAATTTCTGTGGAATCATATTCACATCTGTCTGGTTTGGAGGATCAAGTGAAGACATATGAGGAAAAAGTTCAGGCACTTGAGGATGAGATCAACGACATGAATGAAAAGCTGTCAGCAGCAAACTCTGAGATCAATACCAAGGAAAGCATGGTAAAACAACATGCTAAAGTGGCCGAAGAAGCTGTCTCAGGCTGGGAAAAGGCTGAAGCTGAAGCTTTGGCATTGAAGAACCATCTAGAATCTGTCACTCTTTTAAAACTCACTGCTGAGGACCGTGCATCACATTTAGATGGTGCTCTTAAAGAGTGTATGCGACAAATAAGGAATCTTAAGGAAGAACATGAACTAAAAATACAGGAAGTTGCTCTCTCAAAAACCAAGCAATTAGACAAGATTAAGGGGGAGCTTGACGCTAAGATAGCTAATTTTGAACAGGAACTCCTTAGGTCTGCTGCTGAAAATGGGGCCCTGTCAAGGTCCTTGCAGGAGCGCTCTAACATGCTAGTCAAATTAAGTGAAGAAAAAGCCCATGCCGAGGCTGAAATTGAGCTTCTTAAGGGCAACATAGAATCATGTGAAAGAGAAATTAATTCACTTAAGTATGAACTTCATGTTGTTTCCAAAGAGCTTGAAATTCGCAATGAAGAAAAAAACATGAGTATGAGGTCTGCAGAAGCTGCTAACAAGCAGCAAATGGAGGGCGTGAAAAAAATTGCTAAGTTAGAAGCCGAGTGCCAAAGATTACGTGGTCTAGTGCGGAAAAAGTTACCTGGTCCAGCTGCACTTGCACAGATGAAGCTAGAAGTTGAAAATCTTGGCCGAGATTATGGAGAGAGTCGATTAAGGAAGTCTCCTGTGAAGCCTACTACCCCTAATTTGTCCTCAATCTCATTACCTGAGTTTTCCCTGGAGAATTTGCAGAAATTCCAGAAGGAGAATGAATTTCTTACAGAGCGTTTACTGGCAACTGAAGAAGAAACAAAGATGCTGAAAGAAGCTTTGGCTAAACGCAACAGTGAATTGCAGGCCTCAAGGAGTATGTGTGCTAAAACACTGAGCAAACTTCAAAGTTTGGAAGCACAACTTCAGACAAGTAACCAGCAGAAAGGATCTCCAAAATCCATCATGCAGATAACCCATGAAAGTATTTATAGTCAAAACACAAGCAATGCGCCAAGCTTGCTCTCCATGTCTGAAGATGGAAATGATGATGCAGCAAGTTGTGCTGAGTCTTGGTCTACTGCAGTAGCATCTGGGCTATCCCAATTCCCTAAAGAAAAGTGTACTGAGGAATCAAGCAAATCTGAAGCCATTAAGAAATTGGAACTGATGGACGACTTTCTGGAGGTGGAGAAGTTAGCTCGTTTATCAAATGATTCCAATGTGGGTGCCACTCTTTCAGTTTCTTCAAACGATAAGACAACCGACATTGTGACCAATGATGTATCAGAAGTCAGTACTGGCAAAGACGGTCTGTCGCAAAAGAACGGCAATTCAGATCCATTGCCAAATCAAGTGTCTTCTGGTGCTTCAATGTCAACACATGATCCCCAATCTGATGTTGGTGTTTTGTTATTAACAGAGCTTAAATCAAGAATATTACTAGTTTTTGAGTCCATTACTAAGGATGCTGATATAGGGAAGATTGTGGAGGAGATTAAACATGTGATAGAAGATTCGCATGACACTGCCATTCACCAATCTGTAGGTTTCATTTCCCAGGATGCCCAGCCTTCTGATGCTCCAAGAAATAGGCAGGATAATCCTGAAGATGCTGGCTTAAATCTTGAAAAGGAAACCATTTTGTCTGAGCAACCCAAAGAATATGTGCAGATAACTTCAGATTTGGAAGCTGCAATTTCTCAGATTCATGACTTTGTATTGTTCCTAGGCAAAGAAGCAATGGCATTTCATGACATATCTTCTGATGGTAATGAATTGAGCCAAAAGATTGAGGAGCTTTCTATCACCTTTAATAAAGTTTTGTGCAACAATGCAACCCTGCTACAGTTTGTTCTTGACCTGTCTTATGTTTTAGCCAAAGCAAGTGAATTCAGATTTAATGTCCTTGGCTACAAGGGTACAGAAGCTGAAACTAACAGTCTTGATTGCATAGATAAGATTGCTTTGCCTGAAAATAAGTTAGTTCAAGACAATTCATCTGGAGAAAGATATCAAAATGGTTGTTCCCATGTTCTTAATCCCTGTTCTGATCCTGAGGTTCCTGATGATGGAAATTTGGTATCAGGCTTTAAAGTGAATGCGGCATTACAGAAACTCTCAATGGAAGAATTTGAAGAATTGAAACTAGAGAAAGAGAAAGTAGTAATTGATCTATCAAAATGTACGGAGAGTCTTGAAATAACCAAGTCTCAATTGCTAGAAACTGAGCAACTTCTAACAGAAGTTAAATCACAATTGGCTTTGTCTCAAAGATCAAACAGCTTGGCTGAGACACAGCTGAAGTGTATGGCAGAGTCATACAAGTCACTTGAAACACGTGCACATGAGTTTGAAACTGAGCTGAACCGTCTACAAATTAAGACAGAAGCTCTGGAGAATGAGCTTCAAGATGAAAAGAGGGCTCATGAAGCTGCTCTGGCCAAGAGCAAGGAGCTAGAAGAACAGTTACAAAGGATTGAGATCTCAGCAGCTGATAATGACATCAAACCTGCCCAGGAGAAAGATTTGGCAGCTGCTGCTGAAAAGCTTGCTGAGTGTCAGGAAACCATATTTCTTCTGGGCAAGCAGTTAAACGCTCTACGTCCTCAAACTGAGACAATTGAATCTCCGCACAGTAAGACAAATCCAAAGGCTGAAGGCTTTGCAGTGGATGAACCTACTACAAGTGGCCCAAATTTTCAAGAATTAGGTCAGTTGGAGATGGACAGTGCTAATTCTGCTTTTGTGCAAAGACTGGGTTCGGAGTCCCCTTTGCATTTTTCCAACAGTTTATTTAGCCCATCAGATAACGAATCCAACCTTCCAGCCAGATCTCCAGTACAACATCCAAAATCCAAACCAAGACACAGACCTACCAAGTCAGCCTCTTCTTCAGCTTCTTCTGCCACTACACCGGAGAAACATGCACGAGGATTTAGTAGATTCTTTTCATCAAAAGGAAAACCTGCTCATTGA 3279 0.4123 MDRRWPWKKKSSDKTVVEKAAVALDSSDASNQGNQKQDNNKKPNYVQISVESYSHLSGLEDQVKTYEEKVQALEDEINDMNEKLSAANSEINTKESMVKQHAKVAEEAVSGWEKAEAEALALKNHLESVTLLKLTAEDRASHLDGALKECMRQIRNLKEEHELKIQEVALSKTKQLDKIKGELDAKIANFEQELLRSAAENGALSRSLQERSNMLVKLSEEKAHAEAEIELLKGNIESCEREINSLKYELHVVSKELEIRNEEKNMSMRSAEAANKQQMEGVKKIAKLEAECQRLRGLVRKKLPGPAALAQMKLEVENLGRDYGESRLRKSPVKPTTPNLSSISLPEFSLENLQKFQKENEFLTERLLATEEETKMLKEALAKRNSELQASRSMCAKTLSKLQSLEAQLQTSNQQKGSPKSIMQITHESIYSQNTSNAPSLLSMSEDGNDDAASCAESWSTAVASGLSQFPKEKCTEESSKSEAIKKLELMDDFLEVEKLARLSNDSNVGATLSVSSNDKTTDIVTNDVSEVSTGKDGLSQKNGNSDPLPNQVSSGASMSTHDPQSDVGVLLLTELKSRILLVFESITKDADIGKIVEEIKHVIEDSHDTAIHQSVGFISQDAQPSDAPRNRQDNPEDAGLNLEKETILSEQPKEYVQITSDLEAAISQIHDFVLFLGKEAMAFHDISSDGNELSQKIEELSITFNKVLCNNATLLQFVLDLSYVLAKASEFRFNVLGYKGTEAETNSLDCIDKIALPENKLVQDNSSGERYQNGCSHVLNPCSDPEVPDDGNLVSGFKVNAALQKLSMEEFEELKLEKEKVVIDLSKCTESLEITKSQLLETEQLLTEVKSQLALSQRSNSLAETQLKCMAESYKSLETRAHEFETELNRLQIKTEALENELQDEKRAHEAALAKSKELEEQLQRIEISAADNDIKPAQEKDLAAAAEKLAECQETIFLLGKQLNALRPQTETIESPHSKTNPKAEGFAVDEPTTSGPNFQELGQLEMDSANSAFVQRLGSESPLHFSNSLFSPSDNESNLPARSPVQHPKSKPRHRPTKSASSSASSATTPEKHARGFSRFFSSKGKPAH. 1093
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00445 1092 MobiDBLite consensus disorder prediction 1028 1092 - -
Seca4g00445 1092 Pfam Filament-like plant protein, long coiled-coil 94 974 IPR008587 -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 25 44 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 22 44 - -
Seca4g00445 1092 Coils Coil 140 167 - -
Seca4g00445 1092 Coils Coil 395 415 - -
Seca4g00445 1092 Coils Coil 353 380 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 529 564 - -
Seca4g00445 1092 PANTHER FILAMENT-LIKE PLANT PROTEIN 4 1 1087 - -
Seca4g00445 1092 Coils Coil 868 930 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 972 1003 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 1028 1047 - -
Seca4g00445 1092 Coils Coil 56 97 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 617 638 - -
Seca4g00445 1092 Coils Coil 208 274 - -
Seca4g00445 1092 MobiDBLite consensus disorder prediction 1060 1075 - -
Seca4g00445 1092 SUPERFAMILY Tropomyosin 811 975 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00445 Seca-Chr4 7246958 7253090 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00445 - - gmx:100789174 1692.55
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00445 4 7246958 7253090 Seca4g00445 4 7246958 7253090 ECH
Seca4g00445 4 7246958 7253090 Seca4g00445 4 7246958 7253090 PCT