Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00426 ATGTCGACTTCGGGCGAGGATCAACCCCATCCCCCTCACTTATCTCAATTCAAATTCGACCTATTGCATCCTTCTTCCCACTCTCACTTTCATCACAATCCTCCTCTTCCTCTTCCCCATTCCCATTCTCCTTTTCCTATTCTCCCTGTGACTTTGAATCAAAGATATGAAATCAATAATTTCAAGTCTCACACAAGTAATATCGAAGTAGTTCCTAGTCCGAGCAAAACAGTCAATCTTCCTCCTCCACTTCAAACGGAGCTTAGCCAAAGAGGAAAGCATCATGGTAAAACAAAAGTTCCAAGAAATGCAAAATCTGGGACTAACAGATCAAATGCCGAATCTCCAAATCCTACTGCAGGTAACAACTGTCGTTATGACAGTTCCTTAGGATTATTGACCAAGAAATTTGTCAGCTTGATCCTGGATGCTAAGGATGGTACCCTTGATCTAAATAAAACTGCTGAGATTTTGGAGGTTCAGAAAAGGAGAATTTATGACATTACAAATGTTCTTGAAGGAATAGGATTGATAGAGAAAACTTCAAAGAACCATATACGGTGGAAGTAA 570 0.4 MSTSGEDQPHPPHLSQFKFDLLHPSSHSHFHHNPPLPLPHSHSPFPILPVTLNQRYEINNFKSHTSNIEVVPSPSKTVNLPPPLQTELSQRGKHHGKTKVPRNAKSGTNRSNAESPNPTAGNNCRYDSSLGLLTKKFVSLILDAKDGTLDLNKTAEILEVQKRRIYDITNVLEGIGLIEKTSKNHIRWK. 190
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00426 189 Pfam E2F/DP family winged-helix DNA-binding domain 127 188 IPR003316 GO:0005667|GO:0006355
Seca4g00426 189 FunFam E2F transcription factor 1 119 189 - -
Seca4g00426 189 PANTHER TRANSCRIPTION FACTOR E2F 74 189 IPR015633 GO:0000978|GO:0006357
Seca4g00426 189 MobiDBLite consensus disorder prediction 67 124 - -
Seca4g00426 189 SUPERFAMILY "Winged helix" DNA-binding domain 125 188 IPR036390 -
Seca4g00426 189 MobiDBLite consensus disorder prediction 67 86 - -
Seca4g00426 189 MobiDBLite consensus disorder prediction 102 124 - -
Seca4g00426 189 SMART E2F_TDP_2 125 189 IPR003316 GO:0005667|GO:0006355
Seca4g00426 189 Gene3D - 119 189 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00426 Seca-Chr4 6972363 6974368 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00426 93 189 E2F-DP Transcription Factor Family AT1G47870 68.000 2.39e-37 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF E2F-DP Seca4g00426 E2F_TDP 2e-25 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00426 K06620 - gmx:100811650 207.223