Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00425 ATGGCACTGGGGAATTATAAGACCATATCAGAAGGTGTGGTTGCAGCTGCTAAGCTTAGTGGAAAATGGGGAGTTGTTATTCACGTCAAAGTAGGTGTTTATAAAGAGAATGTTGACATTAAGAGGTCAATGAAGAACTTGATGATCATTGGAGATGGGATGGGTTCCACTATTGTTATTGGTAGTAATAAAGCACAAGATGGCTCCACTACGTTTCGTTCAGCCACTTTCGGGAATGAAGAATAA 246 0.4024 MALGNYKTISEGVVAAAKLSGKWGVVIHVKVGVYKENVDIKRSMKNLMIIGDGMGSTIVIGSNKAQDGSTTFRSATFGNEE. 82
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00425 81 Pfam Pectinesterase 4 78 IPR000070 GO:0030599|GO:0042545
Seca4g00425 81 Gene3D - 2 81 IPR012334 -
Seca4g00425 81 PANTHER PECTINESTERASE 4 78 - -
Seca4g00425 81 ProSitePatterns Pectinesterase signature 1. 21 40 IPR018040 -
Seca4g00425 81 SUPERFAMILY Pectin lyase-like 4 78 IPR011050 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00425 Seca-Chr4 6958508 6958753 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00425 4 78 Carbohydrate Esterase AT1G23200 59.211 5.10e-23 89.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00425 - - vum:124848015 122.864