Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00388 ATGCATGCTTTCTCAGGCTTCGCAGCTCATCTATCAAAAGAGGAGGCAAGCTCAATTGCTCAGAAACCAGGAGTTGTGTCTGTCTTCCCTTACCCAATTCTGAAGCTCCACACATCACGTTCTTGGGATTTCCTCAAATACCAAACTCACGTCAAAATCGACACCGATCCAAACGCGGTCTCTAATTCCTCTTCCTCATCAAACATCGTCATCAGCATATTAGACACAGGTATATGGCCAGAGGCGGCAAGTTTTACGGACAAGGTGGGACATGGGACCCACGTGGCATCCACGGCGGCGGGGACCACCGTGAGTGATGCATCATACTATGGTCTTGCGGCGGGAAGCGCCAAAGGTGGGTCCCCTGAATCCAGGTTGGCGATTTATAAAGTGTGCTCCAATTTTGGGTGTCGTGGCTCTGCTATTCTTGCGGCGTTTGATGATGCTATTGCTGATGGAATGGACGTGCTATCGCTCTCGCTTGGTTCATTTGCTTTTCTCCGACCCGACTTGATATCGGATCCAATTGCAATCGGAGCATTCCACGCCGTGGAGCGCGGAATCGTGGTGGTCTGCTCCGCCGGGAATGATGGACCTGGCCAAAAGACGGTTGTGAATGACGCTCCATGGATTTTAACCGTTGCAGCCTCCACCATCGACCGAAATGATGACTCATATTCAACTGGTGGAAAAATTGACATAGTCAAACAGGTTGGAGGATTAGGGCTTGTTCATATTACTGACCAAAATGGAGCAATAGCATCAAATTCTGGATACTTCCCAGCAACAGTGCACCAGGAGCTGACATTCTTGCAGCATGGATTGGCAATGACACAAGCGAGCTGCCCTAAGCATTTGAGCTCTGATCATATTTCCAACATCAATTACCCTTCCATCGCAATCTCCAACTTCAATGGGAAAGAAGCCGTGAAGGTGAGTAGAACTGTTACAAATGTTGGTGAAAAGGATGAAACAGTATACTCCCCCATTGTTGAAGCTCCCAGTGGGGTAACTGTCAAGTTAATTCCAGATAAACTCCAATTTACAAAAAGTAGTAAAAAACTAAGCTACCAAGTTATTTTCTCCTTGACTTCGACCTCCTCGAAGGAAGATCTGTTTGGATCCATTACCTGGAGTAATGGTAAATATACTGTTCGAAGTCCTTTTGTATTAACTAAGTAG 1182 0.467 MHAFSGFAAHLSKEEASSIAQKPGVVSVFPYPILKLHTSRSWDFLKYQTHVKIDTDPNAVSNSSSSSNIVISILDTGIWPEAASFTDKVGHGTHVASTAAGTTVSDASYYGLAAGSAKGGSPESRLAIYKVCSNFGCRGSAILAAFDDAIADGMDVLSLSLGSFAFLRPDLISDPIAIGAFHAVERGIVVVCSAGNDGPGQKTVVNDAPWILTVAASTIDRNDDSYSTGGKIDIVKQVGGLGLVHITDQNGAIASNSGYFPATVHQELTFLQHGLAMTQASCPKHLSSDHISNINYPSIAISNFNGKEAVKVSRTVTNVGEKDETVYSPIVEAPSGVTVKLIPDKLQFTKSSKKLSYQVIFSLTSTSSKEDLFGSITWSNGKYTVRSPFVLTK. 394
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00388 393 Gene3D Peptidase S8/S53 domain 87 219 IPR036852 GO:0004252|GO:0006508
Seca4g00388 393 SUPERFAMILY Subtilisin-like 61 240 IPR036852 GO:0004252|GO:0006508
Seca4g00388 393 Gene3D - 269 393 - -
Seca4g00388 393 Gene3D - 220 231 - -
Seca4g00388 393 Gene3D Peptidase S8 propeptide/proteinase inhibitor I9 1 37 IPR037045 -
Seca4g00388 393 PANTHER PROPROTEIN CONVERTASE SUBTILISIN/KEXIN 2 88 IPR045051 -
Seca4g00388 393 ProSitePatterns Serine proteases, subtilase family, histidine active site. 91 101 IPR022398 -
Seca4g00388 393 Pfam Subtilase family 84 230 IPR000209 GO:0006508|GO:0008236
Seca4g00388 393 Pfam Fibronectin type-III domain 293 390 IPR041469 -
Seca4g00388 393 ProSiteProfiles Serine proteases, subtilase domain profile. 41 393 - -
Seca4g00388 393 Pfam Peptidase inhibitor I9 2 36 IPR010259 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00388 Seca-Chr4 6331921 6343835 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00388 2 239 Subtilisin-like Serine Gene Family AT1G20160 53.310 3.98e-92 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00388 K25898 - gmx:100820194 333.183