LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00384	ATGGCTCGATTGTTGCCAGACTCCATTGCCAATAACACTATGGAGAAGGATGACATTTTTAATTTATCTTTGTCTGGCTTTGATGTCATAGATGACATAAAAGAAGCACTCAAGGCTAAATGTCCCGGAGTTGTATCTTGTGCTGACCTATTGACATTGGCAGCTAAGGAAGTTGTTTCTGATCAAGTAAGCAATCCATTATACTCTCCTAATTAA	216	0.3843	MARLLPDSIANNTMEKDDIFNLSLSGFDVIDDIKEALKAKCPGVVSCADLLTLAAKEVVSDQVSNPLYSPN.	72

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00384	71	PRINTS	Plant peroxidase signature	44	54	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca4g00384	71	PRINTS	Plant peroxidase signature	25	38	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca4g00384	71	Gene3D	-	1	69	-	-
	Seca4g00384	71	ProSiteProfiles	Plant heme peroxidase family profile.	1	71	IPR002016	GO:0004601\|GO:0006979\|GO:0020037
	Seca4g00384	71	PANTHER	PEROXIDASE 25-RELATED	8	60	IPR000823	GO:0004601\|GO:0006979\|GO:0020037
	Seca4g00384	71	SUPERFAMILY	Heme-dependent peroxidases	7	59	IPR010255	GO:0004601\|GO:0006979\|GO:0020037
	Seca4g00384	71	Pfam	Peroxidase	9	61	IPR002016	GO:0004601\|GO:0006979\|GO:0020037

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00384	Seca-Chr4	6262819	6263034	Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g00384	2	68	Peroxidase	AT2G39040	52.941	1.02e-16	70.5

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00384	K00430		-	gmx:100775970	87.4261