Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00380 ATGACTCAAGATCTTGAGATGAAAGATCGCTCAACGCCTTCCAACACTGTTTCTTCGCCTGCTCCATCTACTCTGCAGCATTTGAAGGAGATAGCATCTCTTATCGAGACCGGCTCTTACTCGAAGGAAGTTCGTAGACTTGCTCGTGCTGTTCGCCTTACAATTGCATTGAGGCGGAAATTGACAGCATCCATTATCTTATCTTTTCTCGATTACGTTCTTACTCCCGGTTCTGAGCCTCGCGCCAAATTGTCTGCTTATCTTCCCAAGGAGGATGATCATGAGATGGAAGTGGATGCTGCAACATCTGCTATTCAAACCCCGGCTAAACATTTGTTGCCTGAGATAGAAATCTACTGTTACCTGCTTGTACTACTTTTTCTGATTGATCAGAAAAAATACAATGAGGCCAAAGCTTGTTCCTCTGCAAGCATTGTATGGCTGAAGAACATGAACAGAAGAACTGTTGATGTTATTGCGTCCAGACTGTATTTTTACTATTCATATAGCTATGAGCTCACGGGAGATCTTGCTGAAATTCGGGGCAACCTCCTTGCATTGCACCGGATTGCCACTTTGCGTCATGATGAGTTGGGTCAGGAAACACTTCTTAATCTGTTACTTCGTAACTACCTTCACTACAACCTATATGATCAGGCGGAGAAGTTGAGGTCCAAGGCTCCACGTTTTGAAGCACATTCAAACCAGCAGTTTTGCCGCTACCTTTTCTACCTTGGGAAAATTCGGACTATTCAGTTGGAGTACACCGATGCAAAAGAGTCTCTCCTGCAGGCTGCTCGGAAAGCTCCAGTTGCAGCACGGGGATTTCGAATTCAATGTAACAAGTGGGCTGTGATAGTGCGTTTACTGTTGGGAGAAATACCTGAGCGGACTGTCTTTATGCAGAAAGGAATGGAGAAAGCTTTGAGGCCTTACTTTGAGCTTACAAATGCTGTAAGGATTGGAGACTTGGAGCTGTTTAGGAATATTGCAGACAAGTTTGTCACCACTTTCAATGCAGACAGAACTCATAATTTGATTGTTCGCCTGCGGCATAATGTCATCAGGACCGGTTTACGTAACATCAGCATCTCCTATTCTCGCATCTCACTGGCTGATGTTGCTAAAAAACTGAGGTTGAACTCTGCAAGTCCCGTTGCTGATGCTGAGAGCATTGTTGCAAAGGCTATTCGTGATGGGGCAATTGATGCCACATTGGATCATACAAATGGGTGGATGGTGTCTAAGGAAACTGGAGATATTTACTCCACAAATGAGCCTCAGTTGGCTTTTAATTCACGGATTGCCTTCTGTCTTAATATGCACAATGAGGCTGTTAGAGCACTTCGTTTTCCGCCAAACACACACAAGGAAAAGGAAAGTGCTGAAAAGAGAAGAGAGAGACAACAGCAAGAGCAAGAACTGGCTAAGCATATTGCGGAGGAGGATGATGATGATTTCTGA 1464 0.4433 MTQDLEMKDRSTPSNTVSSPAPSTLQHLKEIASLIETGSYSKEVRRLARAVRLTIALRRKLTASIILSFLDYVLTPGSEPRAKLSAYLPKEDDHEMEVDAATSAIQTPAKHLLPEIEIYCYLLVLLFLIDQKKYNEAKACSSASIVWLKNMNRRTVDVIASRLYFYYSYSYELTGDLAEIRGNLLALHRIATLRHDELGQETLLNLLLRNYLHYNLYDQAEKLRSKAPRFEAHSNQQFCRYLFYLGKIRTIQLEYTDAKESLLQAARKAPVAARGFRIQCNKWAVIVRLLLGEIPERTVFMQKGMEKALRPYFELTNAVRIGDLELFRNIADKFVTTFNADRTHNLIVRLRHNVIRTGLRNISISYSRISLADVAKKLRLNSASPVADAESIVAKAIRDGAIDATLDHTNGWMVSKETGDIYSTNEPQLAFNSRIAFCLNMHNEAVRALRFPPNTHKEKESAEKRRERQQQEQELAKHIAEEDDDDF. 488
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00380 487 SMART PCI/PINT associated module 174 345 - -
Seca4g00380 487 SMART motif in proteasome subunits, Int-6, Nip-1 and TRIP-15 345 438 IPR000717 -
Seca4g00380 487 Coils Coil 454 481 - -
Seca4g00380 487 MobiDBLite consensus disorder prediction 451 487 - -
Seca4g00380 487 MobiDBLite consensus disorder prediction 1 22 - -
Seca4g00380 487 Pfam Proteasome regulatory subunit C-terminal 420 486 IPR013586 GO:0000502|GO:0030234|GO:0042176
Seca4g00380 487 PANTHER 26S PROTEASOME NON-ATPASE REGULATORY SUBUNIT 3/COP9 SIGNALOSOME COMPLEX SUBUNIT 3 13 478 - -
Seca4g00380 487 ProSiteProfiles PCI domain profile. 239 420 IPR000717 -
Seca4g00380 487 FunFam 26S proteasome non-ATPase regulatory subunit 3 120 443 - -
Seca4g00380 487 SUPERFAMILY "Winged helix" DNA-binding domain 346 421 IPR036390 -
Seca4g00380 487 MobiDBLite consensus disorder prediction 451 480 - -
Seca4g00380 487 Gene3D - 242 417 - -
Seca4g00380 487 Pfam PCI domain 311 416 IPR000717 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00380 Seca-Chr4 6203413 6209430 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00380 K03033 - gmx:100814379 896.73
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00380 4 6203413 6209430 Seca4g00380 4 6203413 6209430 ECH
Seca4g00380 4 6203413 6209430 Seca4g00380 4 6203413 6209430 PCT