Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00378 ATGCTTGATTCCGTCCTTTTGGCGCTTTTTCTGCCTTGCCTTGGCATGAGCGCCATCTTCATCGTCTACATGTGCCTTCTCTGGTACGCCACTACTCATCACCGCCCTGATGCAAGGCAACCGGTGAAGCCCGTCGCTGACAAGGGCTTATCCCCTTTGGAGTTGGAGAAGCTTCCCAGAATCACCGGTAAAGAAGTGGTCATGGGCACCGAATGTGCCGTGTGCCTCGACGAGATGGAGAATGACCAACCGGCACGACTGGTTCCCGGTTGCAACCACGCCTTCCATCTGGAATGTGCTGACGCTTGGCTTTCCAAGCACCCTCTCTGTCCCGTTTGTAGAGCCAAGCTCGATCCTCAAATTTTCAACACTTCTGAAAATCCTTGCTGA 390 0.5359 MLDSVLLALFLPCLGMSAIFIVYMCLLWYATTHHRPDARQPVKPVADKGLSPLELEKLPRITGKEVVMGTECAVCLDEMENDQPARLVPGCNHAFHLECADAWLSKHPLCPVCRAKLDPQIFNTSENPC. 130
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00378 129 PANTHER E3 UBIQUITIN-PROTEIN LIGASE ATL42 16 124 - -
Seca4g00378 129 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 33 120 IPR013083 -
Seca4g00378 129 Pfam Ring finger domain 71 114 IPR001841 -
Seca4g00378 129 SMART ring_2 72 113 IPR001841 -
Seca4g00378 129 SUPERFAMILY RING/U-box 71 121 - -
Seca4g00378 129 ProSiteProfiles Zinc finger RING-type profile. 72 114 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00378 Seca-Chr4 6169158 6169547 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00378 1 129 C3H Transcription Factor Family AT5G42200 52.941 8.74e-47 147
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00378 K19037 - gmx:100776003 226.483
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00378 4 6169158 6169547 Seca4g00378 4 6169158 6169547 ECH
Seca4g00378 4 6169158 6169547 Seca4g00378 4 6169158 6169547 PCT