Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00359 ATGACTCACAAATCGGAAGCCGTGGTTTACCTTCACGGAAACCTCGATTTGAAAATCCTGGAGGCTCGTTTTCTCCCAAACATGGACATGCTTTCAGAGCGCGTCCGTAGATTCTTCTCCGCTCTCAACTCTTGCAGTTCTTCCATCTCCGGCAATAGCAAGCATCGTCATCCACGTCACCATCACCGCAAGATCATCACCAGCGATCCATACGTCACCGTTTGCCTCGCCGGTGCCACGGTTGCACGCACTCGCGTAATCCCAAATTCGCAGAATCCTACATGGAACGAGCGTTTCAAGATCCCTCTGGCTCATCCTGTGAGACAGGTTGAGTTCTACGTGAAGGACAATGACATGTTCGGTGCCGACTTGATCGGAATCGCAACCGTCTCCGCCGCGAAGATCTTATCAGGTGAATTAATTTGCGATTGGTTTCCGGTTATAGGTTCGTTCGGGAAGCCTCCCAAACCTGATTGCGCCGTTCGGCTCGAGATGAAGTTCACGAGGTGCGAGGATAGTACTCTGTACGGCTCTGGAGTTGAACCGGGTCCGGATCGGTTCGTGGTTCGGGATTCGTATTTTCCGGTTCGGCAGGGAGGATCGGTGACGCTGTATCAGGACGCGCATGTTCCTGAGTCGATGTTACCGGAGATTGAATTGGAGGATGGGGTTACGTTTCAGCAAGGGACTTGCTGGGAAGATATCTGTCACGCAATTTTGGAAGCGCATCATTTGGTTTACATTGTGGGTTGGTCCATTTACCACAAGGTGAGGCTGGTTAGAGAGCCCACCAAGCCTTTACCTAGCGGTGGGAATTTGAATTTGGGGGAGTTGCTCAAGTACAAGTCACAAGAAGGTTTGCGAGTTTTATTATTGGTTTGGGATGATAAGACTTCGCACAGCAAATTTTTCATTAACACGACTGGAATAATGCAAACTCATGATGAAGAAACTCGAAAGTTTTTCAAGCATTCTTCAGTTTCATGTGTGCTCTCACCTCGATATGCCAGCAGTAAGCTTAGCATTTTCAAGCAGCAGGTTGTTGGAACGCTCTTTACGCATCATCAGAAATGTGTGATTGTTGATTCTCAAGCACATGGCAATAATAGGAAGATAACTGCATTTATAGGTGGTCTAGATCTTTGTGATGGCCGGTATGATACACCTGAGCACAGAATTTGCCGTGATCTTGACACTGTTTATGAGGATGATTATCATAATCCCACATTTTCTGCAGGAACCAAAGGTCCAAGGCAAGCATGGCACGATTTACATTGCAAAATTGAAGGCCCTGCTGCATATGATATACTCACTAATTTTGAGCAGCGCTGGAGAAAAGCTACCAAATGGTCTGAGTTGGGTAAAAAATTCAAAAGAGTATCTCATTGGCATGATGATTCTTTGATTAAGTTAGAACGCATCTCTTGGATTCTTAGTCCTTCTGAATCAGTTCCATATGATGATCCTGAATTATGGGTTTCAAAGGAAGATGACCCTCAAAATTGGCATGTTCAGGTTTTTCGATCCATAGATTCTGGCTCTTTGAAAGGATTTCCGAAGGAAGTATTTGAAGCTGAGGCTCAGAACCTTGTTTGTGCGAAAAATTTGGTCATAGACAAGAGTATTCAAACAGCGTACATACATGCTATCAGATCTGCACAACATTTTATTTATATCGAGAATCAATATTTCCTTGGATCATCCTTTGCTTGGCCATCTTACAAAGAAGCAGGTTTTGGCAGAATATTGATGTTTACTCATGTAACTTGTTGCATCTGCTTAAAACCTTGTTTGCTCATATTTTCTGTATATGCACCTGTGACTAGTATTTAG 1833 0.4452 MTHKSEAVVYLHGNLDLKILEARFLPNMDMLSERVRRFFSALNSCSSSISGNSKHRHPRHHHRKIITSDPYVTVCLAGATVARTRVIPNSQNPTWNERFKIPLAHPVRQVEFYVKDNDMFGADLIGIATVSAAKILSGELICDWFPVIGSFGKPPKPDCAVRLEMKFTRCEDSTLYGSGVEPGPDRFVVRDSYFPVRQGGSVTLYQDAHVPESMLPEIELEDGVTFQQGTCWEDICHAILEAHHLVYIVGWSIYHKVRLVREPTKPLPSGGNLNLGELLKYKSQEGLRVLLLVWDDKTSHSKFFINTTGIMQTHDEETRKFFKHSSVSCVLSPRYASSKLSIFKQQVVGTLFTHHQKCVIVDSQAHGNNRKITAFIGGLDLCDGRYDTPEHRICRDLDTVYEDDYHNPTFSAGTKGPRQAWHDLHCKIEGPAAYDILTNFEQRWRKATKWSELGKKFKRVSHWHDDSLIKLERISWILSPSESVPYDDPELWVSKEDDPQNWHVQVFRSIDSGSLKGFPKEVFEAEAQNLVCAKNLVIDKSIQTAYIHAIRSAQHFIYIENQYFLGSSFAWPSYKEAGFGRILMFTHVTCCICLKPCLLIFSVYAPVTSI. 611
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00359 610 Gene3D C2 domain 11 175 IPR035892 -
Seca4g00359 610 Pfam C2 domain 13 147 IPR000008 -
Seca4g00359 610 SUPERFAMILY Phospholipase D/nuclease 190 454 - -
Seca4g00359 610 SUPERFAMILY Phospholipase D/nuclease 492 573 - -
Seca4g00359 610 Gene3D Endonuclease Chain A 223 468 - -
Seca4g00359 610 ProSiteProfiles C2 domain profile. 1 145 IPR000008 -
Seca4g00359 610 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 350 385 IPR001736 GO:0003824
Seca4g00359 610 PANTHER PHOSPHOLIPASE D 4 578 IPR015679 -
Seca4g00359 610 Gene3D Endonuclease Chain A 517 586 - -
Seca4g00359 610 Pfam Phospholipase D Active site motif 351 385 IPR001736 GO:0003824
Seca4g00359 610 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 11 167 IPR035892 -
Seca4g00359 610 CDD C2_plant_PLD 7 168 - -
Seca4g00359 610 FunFam Phospholipase D delta 222 466 - -
Seca4g00359 610 SMART C2_3c 14 144 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00359 Seca-Chr4 5845148 5851826 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00359 5 583 Phospholipase D Gene Family (Wang group) AT4G35790 64.657 0.0 801
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00359 K01115 - gmx:100795859 1053.89
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Seca4g00359 4 5845148 5851826 Seca4g00359 4 5845148 5851826 ECH