LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Seca4g00356	ATGGCCCAAAAAGAAGAAGTTGTGGTTGATTTAGAATCAAAAGTTAGTGGCAGCGGTCCAAGTGACAAACTTGAAGACATGCAGGAAAATCCCAAAGGTGAGTCTACGCAGAAGATGAAGCAAGATCATCAAAACCAAGAAAACCAACAACAATCCACATATTCAGGAGAAAACGTTGTGAGATCCACTTCAAATGATTCAAGTCAACGATACTCATGGAAATCAGCAATGAGCAGAACAAAGTCAAGGCTAATTGACCCACCAGAGGAATCATGTGCAAGTTCAGAGTCTAAAAAGCAGAGTGTGCCAGAGGATGATGAAGATGATCTCGAAATGGATTATGTTGAGGACATGCCAAAAGTTTGCAAGAGAACAAGGCTCAAGGCATTCTCAATACTTCAATGGATTTGTCTTACTTCAATAGTAATAGCCTTAGTTTCTAACCTTTGGATTTCTTACTTACAAAAGGTTATAATTTGGAGCCTTCCCTTGTGGGAATGGGAGACAATGATTTTGGTACTAATTTGTGGACGTTTACTCTCAGGTTGGGTAATTAAGGTAATTGTGTTTTTTGTGGAACGCAATTTTATACTAAGAAAACGTATGCTGTATTTTGTGTATGGGTTGAAGCATTCTGTGAAGAATTGTGTTTGGTTGGGTTTGGTTTTGCTCGTTTGGCACTTTATTTTGGTGCAGAAGAAGATCAACAACAAGATTTTGTGGTATGTGACAAAAGCTTTGGTGTGTCTTTTCACGGGTACTCTTATATGGCTTGTGAAAACCATACTTGTTAAGGTCTTTGCTTTGCACTTCCACGTGAGAACTTTCTTTGAACGGATTCGAGAGGCTCTGTTCAGTCAATATGTGATTGAAACGCTGTCTTGTCCTCCGTTGATAGAACAGGAATATGATGATTTTGAACCGTCGATTTCTGTGAGAAGCTTGAGACTTAGTAGGAGGGCGAGAATGCAAAAGAGTGGCACCACTAATACTATTGTGAAGTTGAAGGAAGATGAAGAGATGGCAATTGAGCATTTGCGTAAGTTGAATAAGAGAAATATATCGGCTTGGAATATGAAGAGGATGATTAACATCATCATGAATGGGGCATTTACAACACTGGAAGAGCGTTTAGCAAATTCAGATAGTGAGGATGAGATTTTGCTGCAAATTAGAAGTGAATTCCAAGCAAAGCAGGCTGCTCAGACAATATTCCGGAACGTGGCACAGCCAGGATCCCAATATGTTTTTGTCCAAGATGTGATGCAGTTTATGCGAAAAGATGAAGCTTTGAAGACAATGGATCTGTTGGGAGCAACGTGTACAAACCAGGGCATTAGCATGTCCTCTCTGAGAGAATGGATGGTGAAAGCATATAGAGAGAGAAAGGCACTAGCATTATCACTAAAAGACACAAAAACTGCTGTAGATGAGCTCCATAATATGTTGAACATCATTATTGGTATTGTTATTTTGGTAGTTTGGCTTGTTATACTTGGAACACCCATCCTACACTTTTTTGTCTTCATTGGATCCCAGATTTTAGTGGCAGTATTTGTATTCGGGAATACCTGTAGGACTGTCTTTGAAGCAATCATCTTCTTATTTGTAATGCATCCATTTGATGTTGGTGATCGTTGTGAGGTAGATGGACATCAGATGATAGTGGAAGAGATGAATATACTAACAACAGTGTTTTTGAAGTATGATAACCAAAAGGTTACATATCCAAACAGTGTTCTAGCTACCAAGCCCATCAGTAATTATCAGCGTAGTCCTGATATGGGAGATGCAGTCGATTTCTGTATCCATATCTCCACTCCATTAGATAAAGTTGCCACTATGAAAAAAAGAATTATAGAGTACATTGAAAGGAAGAATGAGCAGTGGCATGAGGCTCCAGTGGTGATGATGAAGGATGTGGAAGACATGAACAAGTTGCACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATAAAAGAAAGATGGAGCAGGAGAGCCCAATTGATTGAAGAGATGGTCCAAGTGTTTAGGGAACTTGATATTGAATACAGGCTTCTCCCTCTTGATGTCAATGTCCAATATCTGCCCCCTCTACAATCCAATAGGCTTCCATCCAATTGGAATACCTGTGCCAGATCTCTTAGGATCTGA	2163	0.3957	MAQKEEVVVDLESKVSGSGPSDKLEDMQENPKGESTQKMKQDHQNQENQQQSTYSGENVVRSTSNDSSQRYSWKSAMSRTKSRLIDPPEESCASSESKKQSVPEDDEDDLEMDYVEDMPKVCKRTRLKAFSILQWICLTSIVIALVSNLWISYLQKVIIWSLPLWEWETMILVLICGRLLSGWVIKVIVFFVERNFILRKRMLYFVYGLKHSVKNCVWLGLVLLVWHFILVQKKINNKILWYVTKALVCLFTGTLIWLVKTILVKVFALHFHVRTFFERIREALFSQYVIETLSCPPLIEQEYDDFEPSISVRSLRLSRRARMQKSGTTNTIVKLKEDEEMAIEHLRKLNKRNISAWNMKRMINIIMNGAFTTLEERLANSDSEDEILLQIRSEFQAKQAAQTIFRNVAQPGSQYVFVQDVMQFMRKDEALKTMDLLGATCTNQGISMSSLREWMVKAYRERKALALSLKDTKTAVDELHNMLNIIIGIVILVVWLVILGTPILHFFVFIGSQILVAVFVFGNTCRTVFEAIIFLFVMHPFDVGDRCEVDGHQMIVEEMNILTTVFLKYDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHISTPLDKVATMKKRIIEYIERKNEQWHEAPVVMMKDVEDMNKLHMSVWLTHKMNYQDIKERWSRRAQLIEEMVQVFRELDIEYRLLPLDVNVQYLPPLQSNRLPSNWNTCARSLRI.	721

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Annotation information

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Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Seca4g00356	720	Pfam	Mechanosensitive ion channel	481	686	IPR006685	GO:0016020\|GO:0055085
	Seca4g00356	720	Coils	Coil	332	352	-	-
	Seca4g00356	720	MobiDBLite	consensus disorder prediction	25	41	-	-
	Seca4g00356	720	PIRSF	Memb_At2g17000	2	719	IPR016688	-
	Seca4g00356	720	PANTHER	MECHANOSENSITIVE ION CHANNEL PROTEIN 5	26	711	IPR016688	-
	Seca4g00356	720	MobiDBLite	consensus disorder prediction	42	79	-	-
	Seca4g00356	720	SUPERFAMILY	Sm-like ribonucleoproteins	530	589	IPR010920	-
	Seca4g00356	720	Gene3D	-	540	589	IPR023408	-
	Seca4g00356	720	MobiDBLite	consensus disorder prediction	1	108	-	-
	Seca4g00356	720	FunFam	Predicted mechanosensitive ion channel	540	589	-	-

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Seca4g00356	Seca-Chr4	5725397	5730684	Dispersed/Wgd

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Seca4g00356	21	715	Mechanosensitive Ion Channel Family	AT1G78610	47.908	0.0	655

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Seca4g00356	K22048		-	cave:132190409	852.047

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