Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Seca4g00356 ATGGCCCAAAAAGAAGAAGTTGTGGTTGATTTAGAATCAAAAGTTAGTGGCAGCGGTCCAAGTGACAAACTTGAAGACATGCAGGAAAATCCCAAAGGTGAGTCTACGCAGAAGATGAAGCAAGATCATCAAAACCAAGAAAACCAACAACAATCCACATATTCAGGAGAAAACGTTGTGAGATCCACTTCAAATGATTCAAGTCAACGATACTCATGGAAATCAGCAATGAGCAGAACAAAGTCAAGGCTAATTGACCCACCAGAGGAATCATGTGCAAGTTCAGAGTCTAAAAAGCAGAGTGTGCCAGAGGATGATGAAGATGATCTCGAAATGGATTATGTTGAGGACATGCCAAAAGTTTGCAAGAGAACAAGGCTCAAGGCATTCTCAATACTTCAATGGATTTGTCTTACTTCAATAGTAATAGCCTTAGTTTCTAACCTTTGGATTTCTTACTTACAAAAGGTTATAATTTGGAGCCTTCCCTTGTGGGAATGGGAGACAATGATTTTGGTACTAATTTGTGGACGTTTACTCTCAGGTTGGGTAATTAAGGTAATTGTGTTTTTTGTGGAACGCAATTTTATACTAAGAAAACGTATGCTGTATTTTGTGTATGGGTTGAAGCATTCTGTGAAGAATTGTGTTTGGTTGGGTTTGGTTTTGCTCGTTTGGCACTTTATTTTGGTGCAGAAGAAGATCAACAACAAGATTTTGTGGTATGTGACAAAAGCTTTGGTGTGTCTTTTCACGGGTACTCTTATATGGCTTGTGAAAACCATACTTGTTAAGGTCTTTGCTTTGCACTTCCACGTGAGAACTTTCTTTGAACGGATTCGAGAGGCTCTGTTCAGTCAATATGTGATTGAAACGCTGTCTTGTCCTCCGTTGATAGAACAGGAATATGATGATTTTGAACCGTCGATTTCTGTGAGAAGCTTGAGACTTAGTAGGAGGGCGAGAATGCAAAAGAGTGGCACCACTAATACTATTGTGAAGTTGAAGGAAGATGAAGAGATGGCAATTGAGCATTTGCGTAAGTTGAATAAGAGAAATATATCGGCTTGGAATATGAAGAGGATGATTAACATCATCATGAATGGGGCATTTACAACACTGGAAGAGCGTTTAGCAAATTCAGATAGTGAGGATGAGATTTTGCTGCAAATTAGAAGTGAATTCCAAGCAAAGCAGGCTGCTCAGACAATATTCCGGAACGTGGCACAGCCAGGATCCCAATATGTTTTTGTCCAAGATGTGATGCAGTTTATGCGAAAAGATGAAGCTTTGAAGACAATGGATCTGTTGGGAGCAACGTGTACAAACCAGGGCATTAGCATGTCCTCTCTGAGAGAATGGATGGTGAAAGCATATAGAGAGAGAAAGGCACTAGCATTATCACTAAAAGACACAAAAACTGCTGTAGATGAGCTCCATAATATGTTGAACATCATTATTGGTATTGTTATTTTGGTAGTTTGGCTTGTTATACTTGGAACACCCATCCTACACTTTTTTGTCTTCATTGGATCCCAGATTTTAGTGGCAGTATTTGTATTCGGGAATACCTGTAGGACTGTCTTTGAAGCAATCATCTTCTTATTTGTAATGCATCCATTTGATGTTGGTGATCGTTGTGAGGTAGATGGACATCAGATGATAGTGGAAGAGATGAATATACTAACAACAGTGTTTTTGAAGTATGATAACCAAAAGGTTACATATCCAAACAGTGTTCTAGCTACCAAGCCCATCAGTAATTATCAGCGTAGTCCTGATATGGGAGATGCAGTCGATTTCTGTATCCATATCTCCACTCCATTAGATAAAGTTGCCACTATGAAAAAAAGAATTATAGAGTACATTGAAAGGAAGAATGAGCAGTGGCATGAGGCTCCAGTGGTGATGATGAAGGATGTGGAAGACATGAACAAGTTGCACATGTCAGTGTGGCTTACACACAAAATGAATTATCAGGACATAAAAGAAAGATGGAGCAGGAGAGCCCAATTGATTGAAGAGATGGTCCAAGTGTTTAGGGAACTTGATATTGAATACAGGCTTCTCCCTCTTGATGTCAATGTCCAATATCTGCCCCCTCTACAATCCAATAGGCTTCCATCCAATTGGAATACCTGTGCCAGATCTCTTAGGATCTGA 2163 0.3957 MAQKEEVVVDLESKVSGSGPSDKLEDMQENPKGESTQKMKQDHQNQENQQQSTYSGENVVRSTSNDSSQRYSWKSAMSRTKSRLIDPPEESCASSESKKQSVPEDDEDDLEMDYVEDMPKVCKRTRLKAFSILQWICLTSIVIALVSNLWISYLQKVIIWSLPLWEWETMILVLICGRLLSGWVIKVIVFFVERNFILRKRMLYFVYGLKHSVKNCVWLGLVLLVWHFILVQKKINNKILWYVTKALVCLFTGTLIWLVKTILVKVFALHFHVRTFFERIREALFSQYVIETLSCPPLIEQEYDDFEPSISVRSLRLSRRARMQKSGTTNTIVKLKEDEEMAIEHLRKLNKRNISAWNMKRMINIIMNGAFTTLEERLANSDSEDEILLQIRSEFQAKQAAQTIFRNVAQPGSQYVFVQDVMQFMRKDEALKTMDLLGATCTNQGISMSSLREWMVKAYRERKALALSLKDTKTAVDELHNMLNIIIGIVILVVWLVILGTPILHFFVFIGSQILVAVFVFGNTCRTVFEAIIFLFVMHPFDVGDRCEVDGHQMIVEEMNILTTVFLKYDNQKVTYPNSVLATKPISNYQRSPDMGDAVDFCIHISTPLDKVATMKKRIIEYIERKNEQWHEAPVVMMKDVEDMNKLHMSVWLTHKMNYQDIKERWSRRAQLIEEMVQVFRELDIEYRLLPLDVNVQYLPPLQSNRLPSNWNTCARSLRI. 721
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Seca4g00356 720 Pfam Mechanosensitive ion channel 481 686 IPR006685 GO:0016020|GO:0055085
Seca4g00356 720 Coils Coil 332 352 - -
Seca4g00356 720 MobiDBLite consensus disorder prediction 25 41 - -
Seca4g00356 720 PIRSF Memb_At2g17000 2 719 IPR016688 -
Seca4g00356 720 PANTHER MECHANOSENSITIVE ION CHANNEL PROTEIN 5 26 711 IPR016688 -
Seca4g00356 720 MobiDBLite consensus disorder prediction 42 79 - -
Seca4g00356 720 SUPERFAMILY Sm-like ribonucleoproteins 530 589 IPR010920 -
Seca4g00356 720 Gene3D - 540 589 IPR023408 -
Seca4g00356 720 MobiDBLite consensus disorder prediction 1 108 - -
Seca4g00356 720 FunFam Predicted mechanosensitive ion channel 540 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Seca4g00356 Seca-Chr4 5725397 5730684 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Seca4g00356 21 715 Mechanosensitive Ion Channel Family AT1G78610 47.908 0.0 655
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Seca4g00356 K22048 - cave:132190409 852.047